{"id":"https://openalex.org/W3017234986","doi":"https://doi.org/10.1093/bioinformatics/btaa116","title":"dv-trio: a family-based variant calling pipeline using DeepVariant","display_name":"dv-trio: a family-based variant calling pipeline using DeepVariant","publication_year":2020,"publication_date":"2020-04-17","ids":{"openalex":"https://openalex.org/W3017234986","doi":"https://doi.org/10.1093/bioinformatics/btaa116","mag":"3017234986","pmid":"https://pubmed.ncbi.nlm.nih.gov/32315409"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa116","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3549/33329165/btaa116.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3549/33329165/btaa116.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068884272","display_name":"Eddie Ip","orcid":"https://orcid.org/0000-0002-4767-7583"},"institutions":[{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"funder","lineage":["https://openalex.org/I19514445"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Eddie K K Ip","raw_affiliation_strings":["St. Vincent\u2019s Clinical School , UNSW Sydney, Sydney, Australia","Victor Chang Cardiac Research Institute , Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"St. Vincent\u2019s Clinical School , UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute , Sydney, Australia","institution_ids":["https://openalex.org/I19514445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065942469","display_name":"Clinton Hadinata","orcid":null},"institutions":[{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"funder","lineage":["https://openalex.org/I19514445"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Clinton Hadinata","raw_affiliation_strings":["Victor Chang Cardiac Research Institute , Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Victor Chang Cardiac Research Institute , Sydney, Australia","institution_ids":["https://openalex.org/I19514445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028008500","display_name":"Joshua W. K. Ho","orcid":"https://orcid.org/0000-0003-2331-7011"},"institutions":[{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"funder","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["AU","CN","HK"],"is_corresponding":false,"raw_author_name":"Joshua W K Ho","raw_affiliation_strings":["School of Biomedical Sciences , The University of Hong Kong, Hong Kong, China","St. Vincent\u2019s Clinical School , UNSW Sydney, Sydney, Australia","Victor Chang Cardiac Research Institute , Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences , The University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"]},{"raw_affiliation_string":"St. Vincent\u2019s Clinical School , UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute , Sydney, Australia","institution_ids":["https://openalex.org/I19514445"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009054460","display_name":"Eleni Giannoulatou","orcid":"https://orcid.org/0000-0002-7084-6736"},"institutions":[{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"funder","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Eleni Giannoulatou","raw_affiliation_strings":["St. Vincent\u2019s Clinical School , UNSW Sydney, Sydney, Australia","Victor Chang Cardiac Research Institute , Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"St. Vincent\u2019s Clinical School , UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute , Sydney, Australia","institution_ids":["https://openalex.org/I19514445"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5009054460"],"corresponding_institution_ids":["https://openalex.org/I19514445","https://openalex.org/I31746571","https://openalex.org/I4210123488"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.439,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.82272171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"11","first_page":"3549","last_page":"3551"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6900560855865479},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6289561986923218},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5783630609512329},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4532982409000397},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4235486090183258},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40628811717033386},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.406171977519989},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3457871377468109},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26626747846603394},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16688385605812073},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15032470226287842}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6900560855865479},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6289561986923218},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5783630609512329},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4532982409000397},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4235486090183258},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40628811717033386},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.406171977519989},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3457871377468109},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26626747846603394},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16688385605812073},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15032470226287842}],"mesh":[{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa116","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3549/33329165/btaa116.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32315409","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32315409","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa116","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3549/33329165/btaa116.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5208258750","display_name":null,"funder_award_id":"1105271","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G6279896353","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320442","funder_display_name":"National Heart Foundation of Australia"},{"id":"https://openalex.org/G7407982985","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7926796024","display_name":null,"funder_award_id":"100848","funder_id":"https://openalex.org/F4320320442","funder_display_name":"National Heart Foundation of Australia"},{"id":"https://openalex.org/G7950585979","display_name":null,"funder_award_id":"101204","funder_id":"https://openalex.org/F4320320442","funder_display_name":"National Heart Foundation of Australia"}],"funders":[{"id":"https://openalex.org/F4320320442","display_name":"National Heart Foundation of Australia","ror":"https://ror.org/039d9wr27"},{"id":"https://openalex.org/F4320320965","display_name":"University of New South Wales","ror":"https://ror.org/03r8z3t63"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3017234986.pdf","grobid_xml":"https://content.openalex.org/works/W3017234986.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2025144591","https://openalex.org/W2168133698","https://openalex.org/W2889664156","https://openalex.org/W2951331911","https://openalex.org/W2951529834","https://openalex.org/W2952870794","https://openalex.org/W2953053177"],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W2380685755","https://openalex.org/W2252100032","https://openalex.org/W2963436428","https://openalex.org/W3171253712","https://openalex.org/W1200423363","https://openalex.org/W2734796617","https://openalex.org/W2171591485","https://openalex.org/W2393236177","https://openalex.org/W2604408404"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
