{"id":"https://openalex.org/W3008883277","doi":"https://doi.org/10.1093/bioinformatics/btaa111","title":"DL4papers: a deep learning approach for the automatic interpretation of scientific articles","display_name":"DL4papers: a deep learning approach for the automatic interpretation of scientific articles","publication_year":2020,"publication_date":"2020-02-15","ids":{"openalex":"https://openalex.org/W3008883277","doi":"https://doi.org/10.1093/bioinformatics/btaa111","mag":"3008883277","pmid":"https://pubmed.ncbi.nlm.nih.gov/32091584"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa111","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3499/33329108/btaa111.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3499/33329108/btaa111.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053316160","display_name":"Leandro A. Bugnon","orcid":"https://orcid.org/0000-0001-5702-946X"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"L A Bugnon","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0001-5702-946X","affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070446733","display_name":"Cristian Yones","orcid":"https://orcid.org/0000-0002-4157-2350"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"C Yones","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0002-4157-2350","affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009906466","display_name":"Jonathan Raad","orcid":"https://orcid.org/0000-0002-9585-1531"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"J Raad","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048439836","display_name":"M. G\u00e9rard","orcid":"https://orcid.org/0000-0001-5145-5943"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"M Gerard","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0001-5145-5943","affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013986713","display_name":"Mar\u00eda Florencia Rubiolo","orcid":"https://orcid.org/0000-0002-5669-7332"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"M Rubiolo","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075967385","display_name":"Gabriela Merino","orcid":"https://orcid.org/0000-0002-0130-6226"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"G Merino","raw_affiliation_strings":["Bioengineering and Bioinformatics Research and Development Institute , IBB, FIUNER-CONICET, Ruta Prov 11, Km 10.5, Oro Verde 3100, Argentina","Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0002-0130-6226","affiliations":[{"raw_affiliation_string":"Bioengineering and Bioinformatics Research and Development Institute , IBB, FIUNER-CONICET, Ruta Prov 11, Km 10.5, Oro Verde 3100, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019698272","display_name":"Milton Pividori","orcid":"https://orcid.org/0000-0002-3035-4403"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210125521","display_name":"Translational Therapeutics (United States)","ror":"https://ror.org/02z3rcy16","country_code":"US","type":"company","lineage":["https://openalex.org/I4210125521"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["AR","US"],"is_corresponding":false,"raw_author_name":"M Pividori","raw_affiliation_strings":["Department of Systems Pharmacology and Translational Therapeutics , University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, USA","Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0002-3035-4403","affiliations":[{"raw_affiliation_string":"Department of Systems Pharmacology and Translational Therapeutics , University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210125521","https://openalex.org/I79576946"]},{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030230762","display_name":"Leandro E. Di Persia","orcid":"https://orcid.org/0000-0002-0331-6989"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"L Di Persia","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0002-0331-6989","affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077266711","display_name":"Diego H. Milone","orcid":"https://orcid.org/0000-0003-2182-4351"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"D H Milone","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0003-2182-4351","affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091024901","display_name":"Georgina Stegmayer","orcid":"https://orcid.org/0000-0003-4459-4560"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"G Stegmayer","raw_affiliation_strings":["Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina"],"raw_orcid":"https://orcid.org/0000-0003-4459-4560","affiliations":[{"raw_affiliation_string":"Research Institute for Signals , Systems and Computational Intelligence, sinc( i ), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina","institution_ids":["https://openalex.org/I151201029"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5053316160"],"corresponding_institution_ids":["https://openalex.org/I151201029"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4168,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59121572,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"11","first_page":"3499","last_page":"3506"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7504000067710876,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7504000067710876,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.18310000002384186,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.008299999870359898,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8361676931381226},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.6896927356719971},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6261801719665527},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6156539916992188},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6058944463729858},{"id":"https://openalex.org/keywords/reading","display_name":"Reading (process)","score":0.5463462471961975},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.5202487707138062},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.44159021973609924},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4311954081058502},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3992142677307129},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3647316098213196},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32749059796333313},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32719871401786804},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3254552483558655}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8361676931381226},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.6896927356719971},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6261801719665527},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6156539916992188},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6058944463729858},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.5463462471961975},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.5202487707138062},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.44159021973609924},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4311954081058502},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3992142677307129},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3647316098213196},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32749059796333313},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32719871401786804},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3254552483558655},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa111","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3499/33329108/btaa111.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32091584","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32091584","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ri.conicet.gov.ar:11336/106811","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/106811","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa111","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3499/33329108/btaa111.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.4399999976158142,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G2135106338","display_name":null,"funder_award_id":"CAI+D 2016 #082","funder_id":"https://openalex.org/F4320310264","funder_display_name":"University of Nebraska-Lincoln"},{"id":"https://openalex.org/G3013800","display_name":null,"funder_award_id":"2018 #3384","funder_id":"https://openalex.org/F4320334832","funder_display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"},{"id":"https://openalex.org/G3551057624","display_name":null,"funder_award_id":"PICT 2014 #2627","funder_id":"https://openalex.org/F4320334832","funder_display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"}],"funders":[{"id":"https://openalex.org/F4320310264","display_name":"University of Nebraska-Lincoln","ror":"https://ror.org/043mer456"},{"id":"https://openalex.org/F4320323408","display_name":"Universidad Nacional del Litoral","ror":"https://ror.org/00pt8r998"},{"id":"https://openalex.org/F4320334832","display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","ror":"https://ror.org/03stxzb56"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3008883277.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1610821757","https://openalex.org/W1818531208","https://openalex.org/W2070619727","https://openalex.org/W2101553882","https://openalex.org/W2155518941","https://openalex.org/W2169491861","https://openalex.org/W2171374484","https://openalex.org/W2174602966","https://openalex.org/W2344539657","https://openalex.org/W2389836769","https://openalex.org/W2493916176","https://openalex.org/W2496487759","https://openalex.org/W2533611849","https://openalex.org/W2541090023","https://openalex.org/W2564980658","https://openalex.org/W2590882361","https://openalex.org/W2600659824","https://openalex.org/W2734608416","https://openalex.org/W2761525601","https://openalex.org/W2766445261","https://openalex.org/W2785059970","https://openalex.org/W2803724033","https://openalex.org/W2807675497","https://openalex.org/W2883380892","https://openalex.org/W2891046609","https://openalex.org/W2897252949","https://openalex.org/W2897782208","https://openalex.org/W2911489562","https://openalex.org/W2945976633","https://openalex.org/W2948566648","https://openalex.org/W2952596923","https://openalex.org/W2963339489","https://openalex.org/W6636556141","https://openalex.org/W6751378157","https://openalex.org/W6753652496","https://openalex.org/W6758293299","https://openalex.org/W6763276856"],"related_works":["https://openalex.org/W4234874385","https://openalex.org/W4313320911","https://openalex.org/W3183204001","https://openalex.org/W4327743144","https://openalex.org/W2607424049","https://openalex.org/W4245077728","https://openalex.org/W4390922876","https://openalex.org/W2323648130","https://openalex.org/W2045408812","https://openalex.org/W2888033806"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1],"precision":[2,316],"medicine,":[3],"next-generation":[4],"sequencing":[5],"and":[6,48,122,145,285,290,308,331],"novel":[7,26],"preclinical":[8],"reports":[9],"have":[10,198,239],"led":[11],"to":[12,82,127,253,257],"an":[13,276],"increasingly":[14],"large":[15],"amount":[16,41],"of":[17,42,65,73,85,89,120,151,177,188,215,230,242,262,295,314],"results,":[18],"published":[19],"in":[20,125,171,201,211,251,292],"the":[21,39,83,86,100,142,158,178,189,212,216,219,226,235,240,243,258,264,293,312,315],"scientific":[22],"literature.":[23],"However,":[24],"identifying":[25,69,281],"treatments":[27,291],"or":[28],"predicting":[29],"a":[30,46,56,63,70,110,139,148,172,195,296,305],"drug":[31,288],"response":[32],"in,":[33],"for":[34,68,194,279,311],"example,":[35],"cancer":[36,173],"patients,":[37],"from":[38,99],"huge":[40],"papers":[43,74,124,152,214],"available":[44,101,325,334,344],"remains":[45],"laborious":[47],"challenging":[49],"work.":[50],"This":[51,203,246,299],"task":[52],"can":[53,95,208,221,247,302],"be":[54,222,248,273,304],"considered":[55],"text":[57],"mining":[58],"problem":[59],"that":[60,94,117,153,166,186,205,210,238,269],"requires":[61],"reading":[62,263],"lot":[64],"academic":[66],"documents":[67,192],"small":[71],"set":[72],"describing":[75],"specific":[76,133,236],"relations":[77,131],"between":[78,132,157,283],"key":[79],"terms.":[80],"Due":[81],"infeasibility":[84],"manual":[87],"curation":[88],"these":[90],"relations,":[91,200],"computational":[92],"methods":[93,164],"automatically":[96,128],"identify":[97],"them":[98,170],"literature":[102],"are":[103,333,343],"urgently":[104],"needed.":[105],"RESULTS:":[106],"We":[107,267],"present":[108],"DL4papers,":[109],"new":[111,300],"method":[112],"based":[113],"on":[114],"deep":[115],"learning":[116],"is":[118,228,324],"capable":[119,229],"analyzing":[121],"interpreting":[123],"order":[126,252],"extract":[129],"relevant":[130,199],"keywords.":[134,159,245],"DL4papers":[135,179],"receives":[136],"as":[137,275],"input":[138,244],"query":[140],"with":[141],"desired":[143],"keywords,":[144],"it":[146],"returns":[147],"ranked":[149,217],"list":[150,181],"contain":[154],"meaningful":[155],"associations":[156,241],"The":[160,175],"comparison":[161],"against":[162],"related":[163],"showed":[165],"our":[167,206,270],"proposal":[168,271],"outperformed":[169],"corpus.":[174],"reliability":[176],"output":[180],"was":[182],"also":[183],"measured,":[184],"revealing":[185],"100%":[187],"first":[190],"two":[191],"retrieved":[193],"particular":[196],"search":[197],"average.":[202],"shows":[204],"model":[207,227],"guarantee":[209],"top-2":[213],"list,":[218],"relation":[220],"effectively":[223],"found.":[224],"Furthermore,":[225],"highlighting,":[231],"within":[232],"each":[233],"document,":[234],"fragments":[237],"very":[249,306],"useful":[250,307],"pay":[254],"attention":[255],"only":[256],"highlighted":[259],"text,":[260],"instead":[261],"full":[265],"paper.":[266],"believe":[268],"could":[272],"used":[274],"accurate":[277],"tool":[278],"rapidly":[280],"relationships":[282],"genes":[284],"their":[286],"mutations,":[287],"responses":[289],"context":[294],"certain":[297],"disease.":[298],"approach":[301],"certainly":[303],"valuable":[309],"resource":[310],"advancement":[313],"medicine":[317],"field.":[318],"AVAILABILITY":[319],"AND":[320],"IMPLEMENTATION:":[321],"A":[322],"web-demo":[323],"at:":[326,335],"http://sinc.unl.edu.ar/web-demo/dl4papers/.":[327],"Full":[328],"source":[329],"code":[330],"data":[332,342],"https://sourceforge.net/projects/sourcesinc/files/dl4papers/.":[336],"CONTACT:":[337],"lbugnon@sinc.unl.edu.ar.":[338],"SUPPLEMENTARY":[339],"INFORMATION:":[340],"Supplementary":[341],"at":[345],"Bioinformatics":[346],"online.":[347]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
