{"id":"https://openalex.org/W3118845805","doi":"https://doi.org/10.1093/bioinformatics/btaa1105","title":"PhyloCorrelate: inferring bacterial gene\u2013gene functional associations through large-scale phylogenetic profiling","display_name":"PhyloCorrelate: inferring bacterial gene\u2013gene functional associations through large-scale phylogenetic profiling","publication_year":2020,"publication_date":"2020-12-29","ids":{"openalex":"https://openalex.org/W3118845805","doi":"https://doi.org/10.1093/bioinformatics/btaa1105","mag":"3118845805","pmid":"https://pubmed.ncbi.nlm.nih.gov/33416870"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1105","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/17/37005854/btaa1105.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/17/37005854/btaa1105.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005795367","display_name":"Benjamin J.-M. Tremblay","orcid":"https://orcid.org/0000-0002-7441-2951"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Benjamin J -M Tremblay","raw_affiliation_strings":["Department of Biology , University of Waterloo, Waterloo, ON N2L 3G1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biology , University of Waterloo, Waterloo, ON N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003877983","display_name":"Briallen Lobb","orcid":"https://orcid.org/0000-0001-7921-0972"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Briallen Lobb","raw_affiliation_strings":["Department of Biology , University of Waterloo, Waterloo, ON N2L 3G1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biology , University of Waterloo, Waterloo, ON N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032187526","display_name":"Andrew C. Doxey","orcid":"https://orcid.org/0000-0003-2015-099X"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Andrew C Doxey","raw_affiliation_strings":["Department of Biology , University of Waterloo, Waterloo, ON N2L 3G1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biology , University of Waterloo, Waterloo, ON N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5032187526"],"corresponding_institution_ids":["https://openalex.org/I151746483"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7509,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.70426375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"37","issue":"1","first_page":"17","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7119367122650146},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.617628812789917},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6131123304367065},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5936322808265686},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5485910773277283},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.508204460144043},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1957189440727234}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7119367122650146},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.617628812789917},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6131123304367065},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5936322808265686},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5485910773277283},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.508204460144043},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1957189440727234},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1105","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/17/37005854/btaa1105.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33416870","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33416870","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1105","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/17/37005854/btaa1105.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2276101949","display_name":null,"funder_award_id":"RGPIN-2019-04266","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320322676","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3118845805.pdf","grobid_xml":"https://content.openalex.org/works/W3118845805.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1958467687","https://openalex.org/W2033656249","https://openalex.org/W2036598926","https://openalex.org/W2039925876","https://openalex.org/W2057885377","https://openalex.org/W2065970966","https://openalex.org/W2095957046","https://openalex.org/W2096173332","https://openalex.org/W2107060668","https://openalex.org/W2107717979","https://openalex.org/W2109363750","https://openalex.org/W2119603641","https://openalex.org/W2142510328","https://openalex.org/W2167504799","https://openalex.org/W2170190415","https://openalex.org/W2171631429","https://openalex.org/W2413508140","https://openalex.org/W2746973103","https://openalex.org/W2888152011","https://openalex.org/W2889019390","https://openalex.org/W2896674752","https://openalex.org/W2952123522","https://openalex.org/W3009070426","https://openalex.org/W4252706339","https://openalex.org/W4254712992"],"related_works":["https://openalex.org/W4312203868","https://openalex.org/W2069013776","https://openalex.org/W2059637021","https://openalex.org/W2038264393","https://openalex.org/W2161444195","https://openalex.org/W2378282666","https://openalex.org/W4210644918","https://openalex.org/W2243442814","https://openalex.org/W2589019771","https://openalex.org/W2034625591"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
