{"id":"https://openalex.org/W3118604916","doi":"https://doi.org/10.1093/bioinformatics/btaa1095","title":"shiny\u00c9PICo: a graphical pipeline to analyze Illumina DNA methylation arrays","display_name":"shiny\u00c9PICo: a graphical pipeline to analyze Illumina DNA methylation arrays","publication_year":2020,"publication_date":"2020-12-23","ids":{"openalex":"https://openalex.org/W3118604916","doi":"https://doi.org/10.1093/bioinformatics/btaa1095","mag":"3118604916","pmid":"https://pubmed.ncbi.nlm.nih.gov/33416853"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1095","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1095","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074045961","display_name":"Octavio Morante-Palacios","orcid":"https://orcid.org/0000-0002-6435-2756"},"institutions":[{"id":"https://openalex.org/I4210137002","display_name":"Institut d'Investigaci\u00f3 en Ci\u00e8ncies de la Salut Germans Trias i Pujol","ror":"https://ror.org/03bzdww12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210137002","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210089592","display_name":"Josep Carreras Leukaemia Research Institute","ror":"https://ror.org/00btzwk36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089592","https://openalex.org/I4210144824","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Octavio Morante-Palacios","raw_affiliation_strings":["Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC) , 08916 Badalona, Spain","Germans Trias i Pujol Research Institute (IGTP) , 08916 Badalona, Spain"],"affiliations":[{"raw_affiliation_string":"Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC) , 08916 Badalona, Spain","institution_ids":["https://openalex.org/I4210089592"]},{"raw_affiliation_string":"Germans Trias i Pujol Research Institute (IGTP) , 08916 Badalona, Spain","institution_ids":["https://openalex.org/I4210137002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082124562","display_name":"Esteban Ballestar","orcid":"https://orcid.org/0000-0002-1400-2440"},"institutions":[{"id":"https://openalex.org/I4210137002","display_name":"Institut d'Investigaci\u00f3 en Ci\u00e8ncies de la Salut Germans Trias i Pujol","ror":"https://ror.org/03bzdww12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210137002","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210089592","display_name":"Josep Carreras Leukaemia Research Institute","ror":"https://ror.org/00btzwk36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089592","https://openalex.org/I4210144824","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Esteban Ballestar","raw_affiliation_strings":["Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC) , 08916 Badalona, Spain","Germans Trias i Pujol Research Institute (IGTP) , 08916 Badalona, Spain"],"affiliations":[{"raw_affiliation_string":"Epigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC) , 08916 Badalona, Spain","institution_ids":["https://openalex.org/I4210089592"]},{"raw_affiliation_string":"Germans Trias i Pujol Research Institute (IGTP) , 08916 Badalona, Spain","institution_ids":["https://openalex.org/I4210137002"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074045961","https://openalex.org/A5082124562"],"corresponding_institution_ids":["https://openalex.org/I4210089592","https://openalex.org/I4210137002"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5883,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.83763319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"37","issue":"2","first_page":"257","last_page":"259"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.942799985408783,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8851132988929749},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7071369886398315},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.6108856201171875},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4380650520324707},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3945891261100769},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35129064321517944},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.274631142616272},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21489328145980835},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14052006602287292},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08888837695121765}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8851132988929749},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7071369886398315},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6108856201171875},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4380650520324707},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3945891261100769},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35129064321517944},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.274631142616272},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21489328145980835},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14052006602287292},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08888837695121765},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1095","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1095","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33416853","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33416853","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1779730050","https://openalex.org/W1964278453","https://openalex.org/W2056040742","https://openalex.org/W2101870168","https://openalex.org/W2106608030","https://openalex.org/W2114104545","https://openalex.org/W2119883345","https://openalex.org/W2123929789","https://openalex.org/W2129958809","https://openalex.org/W2130410032","https://openalex.org/W2130752875","https://openalex.org/W2137526110","https://openalex.org/W2146512944","https://openalex.org/W2233811110","https://openalex.org/W2288929640","https://openalex.org/W2766946295","https://openalex.org/W2804868427","https://openalex.org/W2891101330","https://openalex.org/W2915194834","https://openalex.org/W2938759794","https://openalex.org/W2952567211","https://openalex.org/W2952706790","https://openalex.org/W2965385785","https://openalex.org/W2968658941","https://openalex.org/W2999674525","https://openalex.org/W3099018540"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W2978247079","https://openalex.org/W2140163842","https://openalex.org/W2148708580","https://openalex.org/W3037604406","https://openalex.org/W2166887457","https://openalex.org/W2982252354"],"abstract_inverted_index":{"shiny\u00c9PICo":[0],"is":[1],"freely":[2],"available":[3],"as":[4],"an":[5,17],"R":[6],"package":[7],"at":[8],"the":[9],"Bioconductor":[10],"project":[11],"(http://bioconductor.org/packages/shinyepico/)":[12],"and":[13],"GitHub":[14],"(https://github.com/omorante/shinyepico)":[15],"under":[16],"AGPL3":[18],"license.":[19]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}