{"id":"https://openalex.org/W3118778953","doi":"https://doi.org/10.1093/bioinformatics/btaa1092","title":"Recognition of small molecule\u2013RNA binding sites using RNA sequence and structure","display_name":"Recognition of small molecule\u2013RNA binding sites using RNA sequence and structure","publication_year":2020,"publication_date":"2020-12-23","ids":{"openalex":"https://openalex.org/W3118778953","doi":"https://doi.org/10.1093/bioinformatics/btaa1092","mag":"3118778953","pmid":"https://pubmed.ncbi.nlm.nih.gov/33416863"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1092","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1092","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/36/37005829/btaa1092.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/36/37005829/btaa1092.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041570778","display_name":"Hong Su","orcid":"https://orcid.org/0000-0003-2842-5003"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Su","raw_affiliation_strings":["School of Mathematical Sciences, Nankai University , Tianjin 300071, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, Nankai University , Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020435329","display_name":"Zhenling Peng","orcid":"https://orcid.org/0000-0003-0303-6693"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhenling Peng","raw_affiliation_strings":["Center for Applied Mathematics, Tianjin University , Tianjin 300072, China"],"affiliations":[{"raw_affiliation_string":"Center for Applied Mathematics, Tianjin University , Tianjin 300072, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107636936","display_name":"Jianyi Yang","orcid":"https://orcid.org/0000-0003-2912-7737"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianyi Yang","raw_affiliation_strings":["School of Mathematical Sciences, Nankai University , Tianjin 300071, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, Nankai University , Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020435329","https://openalex.org/A5107636936"],"corresponding_institution_ids":["https://openalex.org/I162868743","https://openalex.org/I205237279"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.8392,"has_fulltext":true,"cited_by_count":72,"citation_normalized_percentile":{"value":0.86160765,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"37","issue":"1","first_page":"36","last_page":"42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.8156394958496094},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.7195956707000732},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.702113151550293},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.6017690896987915},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.6004592776298523},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.4787423014640808},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46279263496398926},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.4148316979408264},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37950122356414795},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.348594069480896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3483206033706665},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32934075593948364},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19084811210632324},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11680877208709717}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.8156394958496094},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.7195956707000732},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.702113151550293},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.6017690896987915},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.6004592776298523},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4787423014640808},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46279263496398926},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.4148316979408264},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37950122356414795},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.348594069480896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3483206033706665},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32934075593948364},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19084811210632324},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11680877208709717},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1092","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1092","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/36/37005829/btaa1092.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33416863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33416863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8034527","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8034527","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1092","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1092","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/36/37005829/btaa1092.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5848258319","display_name":null,"funder_award_id":"0 and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6339323267","display_name":null,"funder_award_id":"11871290","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G649404935","display_name":null,"funder_award_id":"61873185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6646764438","display_name":null,"funder_award_id":"NSFC 11871290","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7101386830","display_name":null,"funder_award_id":"11871290 and 61873185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7346218018","display_name":null,"funder_award_id":"11871","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8047587775","display_name":null,"funder_award_id":"1187129","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8532275144","display_name":null,"funder_award_id":"161003","funder_id":"https://openalex.org/F4320334945","funder_display_name":"Fok Ying Tong Education Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334945","display_name":"Fok Ying Tong Education Foundation","ror":"https://ror.org/01mv9t934"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3118778953.pdf","grobid_xml":"https://content.openalex.org/works/W3118778953.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1031578623","https://openalex.org/W1672171675","https://openalex.org/W1970999032","https://openalex.org/W2018661561","https://openalex.org/W2038093560","https://openalex.org/W2055043387","https://openalex.org/W2095132973","https://openalex.org/W2102803707","https://openalex.org/W2104785011","https://openalex.org/W2128716813","https://openalex.org/W2156125289","https://openalex.org/W2163639779","https://openalex.org/W2164088236","https://openalex.org/W2339718724","https://openalex.org/W2342307854","https://openalex.org/W2418483870","https://openalex.org/W2521640490","https://openalex.org/W2523926726","https://openalex.org/W2791231776","https://openalex.org/W2799691204","https://openalex.org/W2890850847","https://openalex.org/W2892720054","https://openalex.org/W2898364362","https://openalex.org/W2914195316","https://openalex.org/W2925099802","https://openalex.org/W2941779667","https://openalex.org/W2965489613","https://openalex.org/W6637288986"],"related_works":["https://openalex.org/W1472344963","https://openalex.org/W3093937951","https://openalex.org/W2554722417","https://openalex.org/W2569356794","https://openalex.org/W2470187006","https://openalex.org/W1640318440","https://openalex.org/W2581348958","https://openalex.org/W2264054990","https://openalex.org/W3143642740","https://openalex.org/W2581888268"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":31},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
