{"id":"https://openalex.org/W3119762536","doi":"https://doi.org/10.1093/bioinformatics/btaa1080","title":"NinimHMDA: neural integration of neighborhood information on a multiplex heterogeneous network for multiple types of human Microbe\u2013Disease association","display_name":"NinimHMDA: neural integration of neighborhood information on a multiplex heterogeneous network for multiple types of human Microbe\u2013Disease association","publication_year":2020,"publication_date":"2020-12-15","ids":{"openalex":"https://openalex.org/W3119762536","doi":"https://doi.org/10.1093/bioinformatics/btaa1080","mag":"3119762536","pmid":"https://pubmed.ncbi.nlm.nih.gov/33416850"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1080","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1080","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073725331","display_name":"Yuanjing Ma","orcid":"https://orcid.org/0000-0003-3885-1604"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuanjing Ma","raw_affiliation_strings":["Department of Statistics, Northwestern University , Evanston, IL 60208, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, Northwestern University , Evanston, IL 60208, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101606579","display_name":"Hongmei Jiang","orcid":"https://orcid.org/0000-0002-6446-4547"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hongmei Jiang","raw_affiliation_strings":["Department of Statistics, Northwestern University , Evanston, IL 60208, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, Northwestern University , Evanston, IL 60208, USA","institution_ids":["https://openalex.org/I111979921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5073725331","https://openalex.org/A5101606579"],"corresponding_institution_ids":["https://openalex.org/I111979921"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8363,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.72345254,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"36","issue":"24","first_page":"5665","last_page":"5671"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7276777029037476},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.5421595573425293},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5243856310844421},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.49270251393318176},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4882536232471466},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4845373034477234},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4752894639968872},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4515976309776306},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.44371458888053894},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4409744143486023},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4321441352367401},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.43207696080207825},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3556896448135376},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23328256607055664},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1704142689704895},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.11540257930755615},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09241783618927002}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7276777029037476},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.5421595573425293},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5243856310844421},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.49270251393318176},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4882536232471466},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4845373034477234},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4752894639968872},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4515976309776306},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.44371458888053894},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4409744143486023},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4321441352367401},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.43207696080207825},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3556896448135376},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23328256607055664},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1704142689704895},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.11540257930755615},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09241783618927002},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1080","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1080","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33416850","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33416850","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G3960210488","display_name":null,"funder_award_id":"DMS-1222592","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W205829674","https://openalex.org/W1522301498","https://openalex.org/W2039842069","https://openalex.org/W2041073071","https://openalex.org/W2141222510","https://openalex.org/W2162857215","https://openalex.org/W2322763599","https://openalex.org/W2567465856","https://openalex.org/W2580767461","https://openalex.org/W2739664659","https://openalex.org/W2752131265","https://openalex.org/W2753953057","https://openalex.org/W2765928324","https://openalex.org/W2804395101","https://openalex.org/W2807176368","https://openalex.org/W2810107880","https://openalex.org/W2916981547","https://openalex.org/W2952522777","https://openalex.org/W2964121744","https://openalex.org/W2988135813","https://openalex.org/W3016855559","https://openalex.org/W3112755591","https://openalex.org/W6608344535","https://openalex.org/W6631190155","https://openalex.org/W6742264804"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W3006199032","https://openalex.org/W1963826946","https://openalex.org/W2087421209","https://openalex.org/W2547948671","https://openalex.org/W4281783318","https://openalex.org/W2023853334","https://openalex.org/W2001010891","https://openalex.org/W2565428513","https://openalex.org/W3135623036"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
