{"id":"https://openalex.org/W3116195356","doi":"https://doi.org/10.1093/bioinformatics/btaa1062","title":"IGD: high-performance search for large-scale genomic interval datasets","display_name":"IGD: high-performance search for large-scale genomic interval datasets","publication_year":2020,"publication_date":"2020-12-15","ids":{"openalex":"https://openalex.org/W3116195356","doi":"https://doi.org/10.1093/bioinformatics/btaa1062","mag":"3116195356","pmid":"https://pubmed.ncbi.nlm.nih.gov/33367484"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1062","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/118/37005881/btaa1062.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/118/37005881/btaa1062.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065418874","display_name":"Jianglin Feng","orcid":"https://orcid.org/0000-0003-3103-5209"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jianglin Feng","raw_affiliation_strings":["Center for Public Health Genomics, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA"],"affiliations":[{"raw_affiliation_string":"Center for Public Health Genomics, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055872618","display_name":"Nathan C. Sheffield","orcid":"https://orcid.org/0000-0001-5643-4068"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nathan C Sheffield","raw_affiliation_strings":["Center for Public Health Genomics, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","Department of Biochemistry and Molecular Genetics, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","Department of Biomedical Engineering, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","Department of Public Health Sciences, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA"],"affiliations":[{"raw_affiliation_string":"Center for Public Health Genomics, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Biomedical Engineering, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Public Health Sciences, School of Medicine, University of Virginia , Charlottesville, VA 22903, USA","institution_ids":["https://openalex.org/I51556381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5055872618","https://openalex.org/A5065418874"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4001,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.54844315,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"37","issue":"1","first_page":"118","last_page":"120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11309","display_name":"Music and Audio Processing","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunoglobulin-d","display_name":"Immunoglobulin D","score":0.7995023727416992},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5861939191818237},{"id":"https://openalex.org/keywords/interval","display_name":"Interval (graph theory)","score":0.5717189311981201},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5402507781982422},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5379074215888977},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28877198696136475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2578165531158447},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1880917251110077},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.14670991897583008},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10341504216194153},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.08081874251365662},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.0631473958492279}],"concepts":[{"id":"https://openalex.org/C48010095","wikidata":"https://www.wikidata.org/wiki/Q79447","display_name":"Immunoglobulin D","level":4,"score":0.7995023727416992},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5861939191818237},{"id":"https://openalex.org/C2778067643","wikidata":"https://www.wikidata.org/wiki/Q166507","display_name":"Interval (graph theory)","level":2,"score":0.5717189311981201},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5402507781982422},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5379074215888977},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28877198696136475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2578165531158447},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1880917251110077},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.14670991897583008},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10341504216194153},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.08081874251365662},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0631473958492279},{"id":"https://openalex.org/C2778453870","wikidata":"https://www.wikidata.org/wiki/Q188930","display_name":"B cell","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1062","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/118/37005881/btaa1062.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33367484","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33367484","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1062","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/118/37005881/btaa1062.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310536","display_name":"University of Virginia","ror":"https://ror.org/0153tk833"},{"id":"https://openalex.org/F4320334236","display_name":"School of Medicine, University of Virginia","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3116195356.pdf","grobid_xml":"https://content.openalex.org/works/W3116195356.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1967774221","https://openalex.org/W2102619694","https://openalex.org/W2119451273","https://openalex.org/W2123056040","https://openalex.org/W2128016314","https://openalex.org/W2155718935","https://openalex.org/W2184563578","https://openalex.org/W2724377567","https://openalex.org/W2727352277","https://openalex.org/W2750049634","https://openalex.org/W2767743008","https://openalex.org/W2807304153","https://openalex.org/W2811242925","https://openalex.org/W2890044969","https://openalex.org/W2900310474","https://openalex.org/W2901144895","https://openalex.org/W2943766116","https://openalex.org/W2949231850","https://openalex.org/W2960885289","https://openalex.org/W3035577064","https://openalex.org/W3083309117","https://openalex.org/W3118547119"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2086226498","https://openalex.org/W4224037588","https://openalex.org/W1481419192","https://openalex.org/W2807990694","https://openalex.org/W2048515479","https://openalex.org/W1567266611","https://openalex.org/W1600929005","https://openalex.org/W2043786454","https://openalex.org/W1975050814"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
