{"id":"https://openalex.org/W3114754165","doi":"https://doi.org/10.1093/bioinformatics/btaa1060","title":"MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection","display_name":"MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection","publication_year":2020,"publication_date":"2020-12-14","ids":{"openalex":"https://openalex.org/W3114754165","doi":"https://doi.org/10.1093/bioinformatics/btaa1060","mag":"3114754165","pmid":"https://pubmed.ncbi.nlm.nih.gov/33367555"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1060","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2198/39622336/btaa1060.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2198/39622336/btaa1060.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021016658","display_name":"Phuc\u2010Loi Luu","orcid":"https://orcid.org/0000-0001-8045-718X"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Phuc-Loi Luu","raw_affiliation_strings":["Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I136750679"]},{"raw_affiliation_string":"St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085139351","display_name":"Phuc Thinh Ong","orcid":"https://orcid.org/0000-0001-6772-9291"},"institutions":[{"id":"https://openalex.org/I64519617","display_name":"Hanoi University","ror":"https://ror.org/01mxx0e62","country_code":"VN","type":"education","lineage":["https://openalex.org/I64519617"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Phuc-Thinh Ong","raw_affiliation_strings":["Center for Population Health Sciences, Hanoi University of Public Health , Hanoi 100000, Vietnam"],"affiliations":[{"raw_affiliation_string":"Center for Population Health Sciences, Hanoi University of Public Health , Hanoi 100000, Vietnam","institution_ids":["https://openalex.org/I64519617"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025139422","display_name":"Tran Thai Huu Loc","orcid":null},"institutions":[{"id":"https://openalex.org/I123565023","display_name":"Vietnam National University Ho Chi Minh City","ror":"https://ror.org/00waaqh38","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Tran Thai Huu Loc","raw_affiliation_strings":["School of Medicine, Vietnam National University , Ho Chi Minh City 70000, Vietnam"],"affiliations":[{"raw_affiliation_string":"School of Medicine, Vietnam National University , Ho Chi Minh City 70000, Vietnam","institution_ids":["https://openalex.org/I123565023"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005871738","display_name":"Dilys Lam","orcid":"https://orcid.org/0000-0002-9713-1861"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dilys Lam","raw_affiliation_strings":["Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079320372","display_name":"Ruth Pidsley","orcid":null},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ruth Pidsley","raw_affiliation_strings":["Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I136750679"]},{"raw_affiliation_string":"St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004427898","display_name":"Clare Stirzaker","orcid":"https://orcid.org/0000-0001-5601-3140"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Clare Stirzaker","raw_affiliation_strings":["Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I136750679"]},{"raw_affiliation_string":"St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041095680","display_name":"Susan J. Clark","orcid":"https://orcid.org/0000-0001-5925-5030"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Susan J Clark","raw_affiliation_strings":["Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"Epigenetics Research Laboratory, Genomics and Epigenetics Theme, Garvan Institute of Medical Research , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I136750679"]},{"raw_affiliation_string":"St Vincent's Clinical School, UNSW , Sydney, NSW 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021016658","https://openalex.org/A5041095680"],"corresponding_institution_ids":["https://openalex.org/I136750679","https://openalex.org/I31746571","https://openalex.org/I4210123488"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1672,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.51735531,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":"15","first_page":"2198","last_page":"2200"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.7370243668556213},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.6700577735900879},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.625061571598053},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5968093276023865},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5293816924095154},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4965360760688782},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4929075241088867},{"id":"https://openalex.org/keywords/multiplex-polymerase-chain-reaction","display_name":"Multiplex polymerase chain reaction","score":0.479440838098526},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4535180628299713},{"id":"https://openalex.org/keywords/methylated-dna-immunoprecipitation","display_name":"Methylated DNA immunoprecipitation","score":0.41054025292396545},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.354765921831131},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.3028755486011505},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3017774820327759},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24198377132415771},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18951290845870972},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07912951707839966}],"concepts":[{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.7370243668556213},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.6700577735900879},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.625061571598053},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5968093276023865},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5293816924095154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4965360760688782},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4929075241088867},{"id":"https://openalex.org/C90583042","wikidata":"https://www.wikidata.org/wiki/Q1952456","display_name":"Multiplex polymerase chain reaction","level":4,"score":0.479440838098526},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4535180628299713},{"id":"https://openalex.org/C116114238","wikidata":"https://www.wikidata.org/wiki/Q6823960","display_name":"Methylated DNA immunoprecipitation","level":5,"score":0.41054025292396545},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.354765921831131},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.3028755486011505},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3017774820327759},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24198377132415771},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18951290845870972},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07912951707839966},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1060","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2198/39622336/btaa1060.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33367555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33367555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8352503","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8352503","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1060","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/15/2198/39622336/btaa1060.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6777539648","display_name":null,"funder_award_id":"RG-18-09","funder_id":"https://openalex.org/F4320334715","funder_display_name":"Cancer Council NSW"},{"id":"https://openalex.org/G696131228","display_name":null,"funder_award_id":"1063559","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320334715","display_name":"Cancer Council NSW","ror":"https://ror.org/05gsbkp40"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3114754165.pdf","grobid_xml":"https://content.openalex.org/works/W3114754165.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1499825413","https://openalex.org/W1978089932","https://openalex.org/W2031857387","https://openalex.org/W2046646392","https://openalex.org/W2097438318","https://openalex.org/W2131374955","https://openalex.org/W2135157239","https://openalex.org/W2279206987","https://openalex.org/W2460742292","https://openalex.org/W2495746023","https://openalex.org/W2549664084","https://openalex.org/W2579926948","https://openalex.org/W2886223143","https://openalex.org/W2909393089","https://openalex.org/W2946248353","https://openalex.org/W3036142415","https://openalex.org/W3053669019","https://openalex.org/W6781837481"],"related_works":["https://openalex.org/W2418592392","https://openalex.org/W2124748744","https://openalex.org/W2745907774","https://openalex.org/W2795555897","https://openalex.org/W1858190415","https://openalex.org/W2063669948","https://openalex.org/W1975323116","https://openalex.org/W2066005224","https://openalex.org/W2589930442","https://openalex.org/W2083048402"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
