{"id":"https://openalex.org/W3117086625","doi":"https://doi.org/10.1093/bioinformatics/btaa1048","title":"Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data","display_name":"Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3117086625","doi":"https://doi.org/10.1093/bioinformatics/btaa1048","mag":"3117086625","pmid":"https://pubmed.ncbi.nlm.nih.gov/33346800"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1048","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1048","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015468870","display_name":"Anand Mayakonda","orcid":"https://orcid.org/0000-0003-1162-687X"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anand Mayakonda","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1162-687X","affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]},{"raw_affiliation_string":"Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026393523","display_name":"Maximilian Sch\u00f6nung","orcid":"https://orcid.org/0000-0002-9778-9698"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210111460","display_name":"National Center for Tumor Diseases","ror":"https://ror.org/01txwsw02","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210111460"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maximilian Sch\u00f6nung","raw_affiliation_strings":["Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany","Section Translational Cancer Epigenomics, Division of Translational Medical Oncology, German Cancer Research Center (DKFZ) & National Center for Tumor Diseases (NCT) , 69120 Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9778-9698","affiliations":[{"raw_affiliation_string":"Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Section Translational Cancer Epigenomics, Division of Translational Medical Oncology, German Cancer Research Center (DKFZ) & National Center for Tumor Diseases (NCT) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210111460","https://openalex.org/I87890613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053990627","display_name":"Joschka Hey","orcid":"https://orcid.org/0000-0003-2842-764X"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Joschka Hey","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany","German-Israeli Helmholtz Research School in Cancer Biology , partner site Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]},{"raw_affiliation_string":"Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"German-Israeli Helmholtz Research School in Cancer Biology , partner site Heidelberg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054411168","display_name":"R.N. Batra","orcid":"https://orcid.org/0000-0001-7010-8189"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rajbir Nath Batra","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060867628","display_name":"Clarissa Feuerstein-Akgoz","orcid":"https://orcid.org/0000-0002-6495-1468"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Clarissa Feuerstein-Akgoz","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]},{"raw_affiliation_string":"Faculty of Biosciences, Heidelberg University , 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101476809","display_name":"Kristin Koehler","orcid":"https://orcid.org/0009-0009-2659-6790"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kristin K\u00f6hler","raw_affiliation_strings":["Bioinformatics Bachelor Program, Free University Berlin , 14195 Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Bachelor Program, Free University Berlin , 14195 Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017588184","display_name":"Daniel B. Lipka","orcid":"https://orcid.org/0000-0001-5081-7869"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210111460","display_name":"National Center for Tumor Diseases","ror":"https://ror.org/01txwsw02","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210111460"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel B Lipka","raw_affiliation_strings":["Section Translational Cancer Epigenomics, Division of Translational Medical Oncology, German Cancer Research Center (DKFZ) & National Center for Tumor Diseases (NCT) , 69120 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section Translational Cancer Epigenomics, Division of Translational Medical Oncology, German Cancer Research Center (DKFZ) & National Center for Tumor Diseases (NCT) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210111460","https://openalex.org/I87890613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048990023","display_name":"Roc\u0131\u0301o Sotillo","orcid":"https://orcid.org/0000-0002-0855-7917"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rocio Sotillo","raw_affiliation_strings":["Division of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020136143","display_name":"Christoph Plass","orcid":"https://orcid.org/0000-0003-2554-3952"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Plass","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","German Cancer Research Consortium (DKTK) , partner site Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]},{"raw_affiliation_string":"German Cancer Research Consortium (DKTK) , partner site Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002758394","display_name":"Pavlo Lutsik","orcid":"https://orcid.org/0000-0001-9383-8555"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pavlo Lutsik","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9383-8555","affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055276195","display_name":"R\u00e9ka T\u00f3th","orcid":"https://orcid.org/0000-0002-6096-1052"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Reka Toth","raw_affiliation_strings":["Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","Division of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"]},{"raw_affiliation_string":"Division of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5055276195"],"corresponding_institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I87890613"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6725,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.66964809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"36","issue":"22-23","first_page":"5524","last_page":"5525"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.934499979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.934499979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.02319999970495701,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.0066999997943639755,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9502502679824829},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8158016204833984},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6966534852981567},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6026625633239746},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.49620920419692993},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.48978161811828613},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.4862769842147827},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.45296645164489746},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44326478242874146},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41823089122772217},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4175221920013428},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3852892816066742},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3787236213684082},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.30433982610702515},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2720829248428345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10563445091247559}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9502502679824829},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8158016204833984},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6966534852981567},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6026625633239746},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.49620920419692993},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.48978161811828613},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.4862769842147827},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.45296645164489746},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44326478242874146},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41823089122772217},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4175221920013428},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3852892816066742},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3787236213684082},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.30433982610702515},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2720829248428345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10563445091247559},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1048","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1048","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33346800","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33346800","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G2767931783","display_name":null,"funder_award_id":"70113869","funder_id":"https://openalex.org/F4320323556","funder_display_name":"Deutsche Krebshilfe"},{"id":"https://openalex.org/G7415261474","display_name":"FOR 2674: Altersassoziierte epigenetische Ver\u00e4nderungen als therapeutischer Ansatzpunkt in der Behandlung der akuten myeloischen Leuk\u00e4mie","funder_award_id":"336840530","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7493615029","display_name":null,"funder_award_id":"336840530","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"}],"funders":[{"id":"https://openalex.org/F4320308022","display_name":"California Department of Fish and Game","ror":"https://ror.org/02v6w2r95"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323556","display_name":"Deutsche Krebshilfe","ror":"https://ror.org/01wxdd722"},{"id":"https://openalex.org/F4320326487","display_name":"Deutsches Zentrum f\u00fcr Lungenforschung","ror":"https://ror.org/03dx11k66"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1985604190","https://openalex.org/W1987180785","https://openalex.org/W2051465150","https://openalex.org/W2126434569","https://openalex.org/W2131374955","https://openalex.org/W2150194502","https://openalex.org/W2150936392","https://openalex.org/W2949522488"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W3156537409","https://openalex.org/W2140163842","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2098339479"],"abstract_inverted_index":{"MOTIVATION:":[0],"Whole-genome":[1],"bisulfite":[2],"sequencing":[3],"(WGBS)":[4],"measures":[5],"DNA":[6],"methylation":[7,70,131],"at":[8,162,178],"base":[9],"pair":[10],"resolution":[11],"resulting":[12],"in":[13,29],"large":[14,52],"bedGraph":[15,62],"like":[16],"coverage":[17],"files.":[18],"Current":[19],"options":[20],"for":[21,48,98,117],"processing":[22,109],"such":[23],"files":[24],"are":[25,176],"hindered":[26],"by":[27,139],"discrepancies":[28],"file":[30,67,92],"format":[31,93],"specification,":[32],"speed,":[33],"and":[34,78,81,103,107,123,144,164],"memory":[35],"requirements.":[36],"RESULTS:":[37],"We":[38],"developed":[39],"methrix,":[40],"an":[41,154],"R":[42,155],"package,":[43,156],"which":[44],"provides":[45],"a":[46,60,89],"toolset":[47],"systematic":[49],"analysis":[50,128],"of":[51,56,110,129],"datasets.":[53],"Core":[54],"functionality":[55],"the":[57,127,169],"package":[58],"includes":[59],"comprehensive":[61],"or":[63],"similar":[64],"tab-separated":[65],"text":[66],"reader-which":[68],"summarizes":[69],"calls":[71],"based":[72],"on":[73],"annotated":[74],"reference":[75,84],"indices,":[76],"infers":[77],"collapses":[79],"strands":[80],"handles":[82],"uncovered":[83],"CpG":[85],"sites":[86],"while":[87],"facilitating":[88],"flexible":[90],"input":[91],"specification.":[94],"Additional":[95],"optimized":[96],"functions":[97],"quality":[99],"control":[100],"filtering,":[101],"subsetting":[102],"visualization":[104],"allow":[105],"user-friendly":[106],"effective":[108],"WGBS":[111,137],"results.":[112],"Easy":[113],"integration":[114],"with":[115],"tools":[116],"differentially":[118],"methylated":[119],"region":[120],"(DMR)":[121],"calling":[122],"annotation":[124],"further":[125],"eases":[126],"genome-wide":[130],"data.":[132],"Overall,":[133],"methrix":[134],"enriches":[135],"established":[136],"workflows":[138],"bringing":[140],"together":[141],"computational":[142],"efficiency":[143],"versatile":[145],"functionality.":[146],"AVAILABILITY":[147],"AND":[148],"IMPLEMENTATION:":[149],"Methrix":[150],"is":[151],"implemented":[152],"as":[153],"made":[157],"available":[158,177],"under":[159],"MIT":[160],"license":[161],"https://github.com/CompEpigen/methrix":[163],"can":[165],"be":[166],"installed":[167],"from":[168],"Bioconductor":[170],"repository.":[171],"SUPPLEMENTARY":[172],"INFORMATION:":[173],"Supplementary":[174],"data":[175],"Bioinformatics":[179],"online.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
