{"id":"https://openalex.org/W3111119124","doi":"https://doi.org/10.1093/bioinformatics/btaa1045","title":"MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins","display_name":"MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3111119124","doi":"https://doi.org/10.1093/bioinformatics/btaa1045","mag":"3111119124","pmid":"https://pubmed.ncbi.nlm.nih.gov/33325498"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5533/36855855/btaa1045.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5533/36855855/btaa1045.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015288701","display_name":"Marco Necci","orcid":"https://orcid.org/0000-0001-9377-482X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Necci","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Piovesan","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055147027","display_name":"Damiano Clementel","orcid":"https://orcid.org/0000-0002-7395-2921"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Clementel","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028237788","display_name":"Zsuzsanna Doszt\u00e1nyi","orcid":"https://orcid.org/0000-0002-3624-5937"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Zsuzsanna Doszt\u00e1nyi","raw_affiliation_strings":["MTA-ELTE Lend\u00fclet Bioinformatics Research Group, Department of Biochemistry, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MTA-ELTE Lend\u00fclet Bioinformatics Research Group, Department of Biochemistry, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C E Tosatto","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4525-7793","affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.8017,"has_fulltext":true,"cited_by_count":98,"citation_normalized_percentile":{"value":0.97103758,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"22-23","first_page":"5533","last_page":"5534"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.7702999711036682,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.7702999711036682,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.060100000351667404,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.02710000053048134,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7994239926338196},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.767005443572998},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.7491954565048218},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6754399538040161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6163609623908997},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6016641855239868},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.5186535716056824},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.4519576132297516},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32277506589889526},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25522544980049133},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24473720788955688},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.24200895428657532},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1714581847190857},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.11046558618545532},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1091715395450592},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0695033073425293}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7994239926338196},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.767005443572998},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.7491954565048218},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6754399538040161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6163609623908997},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6016641855239868},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.5186535716056824},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.4519576132297516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32277506589889526},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25522544980049133},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24473720788955688},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.24200895428657532},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1714581847190857},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.11046558618545532},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1091715395450592},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0695033073425293},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5533/36855855/btaa1045.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33325498","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33325498","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3412182","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3412182","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:142843","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/142843","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5533/36855855/btaa1045.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2599072453","display_name":null,"funder_award_id":"PRIN 2017","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8091316406","display_name":"Driving the functional characterization of intrinsically disordered proteins","funder_award_id":"778247","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3111119124.pdf","grobid_xml":"https://content.openalex.org/works/W3111119124.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1792685479","https://openalex.org/W1964903151","https://openalex.org/W2014776147","https://openalex.org/W2051916497","https://openalex.org/W2055193239","https://openalex.org/W2076742999","https://openalex.org/W2105629164","https://openalex.org/W2125022522","https://openalex.org/W2129448726","https://openalex.org/W2156407548","https://openalex.org/W2156465034","https://openalex.org/W2161880345","https://openalex.org/W2173591891","https://openalex.org/W2302501749","https://openalex.org/W2519625972","https://openalex.org/W2568226856","https://openalex.org/W2571643507","https://openalex.org/W2755096271","https://openalex.org/W2767649956","https://openalex.org/W2773787581","https://openalex.org/W2806884808","https://openalex.org/W2900359059","https://openalex.org/W2912250830","https://openalex.org/W4210968583"],"related_works":["https://openalex.org/W3092794487","https://openalex.org/W2094752534","https://openalex.org/W2052894646","https://openalex.org/W2025055488","https://openalex.org/W2575115220","https://openalex.org/W2580329791","https://openalex.org/W2806882504","https://openalex.org/W2909412621","https://openalex.org/W3032536091","https://openalex.org/W2145037531"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,93],"earlier":[2],"version":[3,95],"of":[4,26,58,65,89,96,107],"MobiDB-lite":[5,44,97,115],"is":[6],"currently":[7],"used":[8],"in":[9,75,87],"large-scale":[10],"proteome":[11,104],"annotation":[12],"platforms":[13],"to":[14],"detect":[15],"intrinsic":[16],"disorder.":[17,109],"However,":[18],"new":[19,94,100],"theoretical":[20],"models":[21],"allow":[22],"for":[23,102],"the":[24,90,103,114,126],"classification":[25,57],"intrinsically":[27],"disordered":[28],"regions":[29,62,72],"into":[30],"subtypes":[31],"from":[32,125],"sequence":[33],"features":[34],"associated":[35],"with":[36,63],"specific":[37],"polymeric":[38],"properties":[39],"or":[40,68,73,78,80],"compositional":[41],"bias.":[42],"RESULTS:":[43],"3.0":[45,116],"maintains":[46],"its":[47],"previous":[48],"speed":[49],"and":[50,119],"performance":[51],"but":[52],"also":[53],"provides":[54],"a":[55,99,120],"finer":[56],"disorder":[59],"by":[60],"identifying":[61],"characteristics":[64],"polyolyampholytes,":[66],"positive":[67],"negative":[69],"polyelectrolytes,":[70],"low-complexity":[71],"enriched":[74],"cysteine,":[76],"proline":[77],"glycine":[79],"polar":[81],"residues.":[82],"Subregions":[83],"are":[84,123],"abundantly":[85],"detected":[86],"IDRs":[88],"human":[91],"proteome.":[92],"represents":[98],"step":[101],"level":[105],"analysis":[106],"protein":[108],"AVAILABILITY":[110],"AND":[111],"IMPLEMENTATION:":[112],"Both":[113],"source":[117],"code":[118],"docker":[121],"container":[122],"available":[124],"GitHub":[127],"repository:":[128],"https://github.com/BioComputingUP/MobiDB-lite.":[129]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":15}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
