{"id":"https://openalex.org/W3113000905","doi":"https://doi.org/10.1093/bioinformatics/btaa1028","title":"ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases","display_name":"ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases","publication_year":2020,"publication_date":"2020-11-30","ids":{"openalex":"https://openalex.org/W3113000905","doi":"https://doi.org/10.1093/bioinformatics/btaa1028","mag":"3113000905","pmid":"https://pubmed.ncbi.nlm.nih.gov/33325481"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1028","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1028","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8023686","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077409882","display_name":"Taylor Jones","orcid":"https://orcid.org/0000-0002-8591-2847"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Taylor Jones","raw_affiliation_strings":["Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000578394","display_name":"Samuel B. Day","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel B Day","raw_affiliation_strings":["Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013763874","display_name":"Luke Myers","orcid":"https://orcid.org/0000-0003-1132-2550"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke Myers","raw_affiliation_strings":["Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046971682","display_name":"James E. Crowe","orcid":"https://orcid.org/0000-0002-0049-1079"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James E Crowe","raw_affiliation_strings":["Department of Pathology, Microbiology, and Immunology, Vanderbilt University , Nashville, TN 37232, USA","Department of Pediatrics, Vanderbilt University Medical Center , Nashville, TN 37232, USA","Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Microbiology, and Immunology, Vanderbilt University , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Pediatrics, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063125477","display_name":"Cinque Soto","orcid":"https://orcid.org/0000-0002-3997-6217"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cinque Soto","raw_affiliation_strings":["Department of Pediatrics, Vanderbilt University Medical Center , Nashville, TN 37232, USA","Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt Vaccine Center, Vanderbilt University Medical Center , Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I901861585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077409882"],"corresponding_institution_ids":["https://openalex.org/I901861585"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2423,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54011923,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"24","first_page":"5695","last_page":"5697"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.6256112456321716},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5930118560791016},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5898354053497314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5728042125701904},{"id":"https://openalex.org/keywords/complementarity","display_name":"Complementarity (molecular biology)","score":0.46205249428749084},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.441715806722641},{"id":"https://openalex.org/keywords/complementarity-determining-region","display_name":"Complementarity determining region","score":0.4383496046066284},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4275367558002472},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.4206686317920685},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.41905465722084045},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37246575951576233},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.32474401593208313},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2904115915298462},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2702443301677704},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22940421104431152},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.2168179154396057},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1507757008075714},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.11267036199569702},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09702780842781067}],"concepts":[{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.6256112456321716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5930118560791016},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5898354053497314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5728042125701904},{"id":"https://openalex.org/C202269582","wikidata":"https://www.wikidata.org/wiki/Q2644277","display_name":"Complementarity (molecular biology)","level":2,"score":0.46205249428749084},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.441715806722641},{"id":"https://openalex.org/C85630698","wikidata":"https://www.wikidata.org/wiki/Q3826179","display_name":"Complementarity determining region","level":4,"score":0.4383496046066284},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4275367558002472},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.4206686317920685},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.41905465722084045},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37246575951576233},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.32474401593208313},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2904115915298462},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2702443301677704},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22940421104431152},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.2168179154396057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1507757008075714},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.11267036199569702},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09702780842781067},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1028","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1028","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33325481","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33325481","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8023686","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8023686","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8023686","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8023686","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6894810935","display_name":null,"funder_award_id":"U01 AI150739","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320317977","display_name":"Human Vaccines Project","ror":"https://ror.org/02jkp0740"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1520434148","https://openalex.org/W2055043387","https://openalex.org/W2091477384","https://openalex.org/W2296221004","https://openalex.org/W2811364409","https://openalex.org/W2910384850","https://openalex.org/W2911980279","https://openalex.org/W2950118240","https://openalex.org/W2979751218","https://openalex.org/W3042808865","https://openalex.org/W3043056436","https://openalex.org/W4255659575"],"related_works":["https://openalex.org/W2060496539","https://openalex.org/W4280506224","https://openalex.org/W2018330851","https://openalex.org/W3201606428","https://openalex.org/W3087255036","https://openalex.org/W2143290387","https://openalex.org/W2363023554","https://openalex.org/W2089637072","https://openalex.org/W2949235507","https://openalex.org/W2062350227"],"abstract_inverted_index":{"Documentation,":[0],"software":[1,12],"support":[2],"and":[3],"the":[4,16],"codebase":[5],"are":[6],"all":[7],"available":[8],"at":[9],"https://github.com/crowelab/clonomatch.":[10],"This":[11],"is":[13],"distributed":[14],"under":[15],"GPL":[17],"v3":[18],"license.":[19]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
