{"id":"https://openalex.org/W3111478343","doi":"https://doi.org/10.1093/bioinformatics/btaa1021","title":"New computational model for miRNA-mediated repression reveals novel regulatory roles of miRNA bindings inside the coding region","display_name":"New computational model for miRNA-mediated repression reveals novel regulatory roles of miRNA bindings inside the coding region","publication_year":2020,"publication_date":"2020-11-25","ids":{"openalex":"https://openalex.org/W3111478343","doi":"https://doi.org/10.1093/bioinformatics/btaa1021","mag":"3111478343","pmid":"https://pubmed.ncbi.nlm.nih.gov/33320173"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1021","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1021","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029184209","display_name":"Shaked Bergman","orcid":"https://orcid.org/0000-0001-6013-2214"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Shaked Bergman","raw_affiliation_strings":["Department of Biomedical Engineering, Tel-Aviv University , 69978 Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Tel-Aviv University , 69978 Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091136913","display_name":"Alon Diament","orcid":"https://orcid.org/0000-0002-3939-5703"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Alon Diament","raw_affiliation_strings":["Department of Biomedical Engineering, Tel-Aviv University , 69978 Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Tel-Aviv University , 69978 Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021278923","display_name":"Tamir Tuller","orcid":"https://orcid.org/0000-0003-4194-7068"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Tamir Tuller","raw_affiliation_strings":["Department of Biomedical Engineering, Tel-Aviv University , 69978 Tel Aviv, Israel","The Sagol School of Neuroscience, Tel-Aviv University , 69978 Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Tel-Aviv University , 69978 Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"The Sagol School of Neuroscience, Tel-Aviv University , 69978 Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5021278923"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3196,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.51366197,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"22-23","first_page":"5398","last_page":"5404"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/psychological-repression","display_name":"Psychological repression","score":0.9126088619232178},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7315976619720459},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.6391465663909912},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.63631671667099},{"id":"https://openalex.org/keywords/untranslated-region","display_name":"Untranslated region","score":0.5702590942382812},{"id":"https://openalex.org/keywords/three-prime-untranslated-region","display_name":"Three prime untranslated region","score":0.46655625104904175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.451140433549881},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44317278265953064},{"id":"https://openalex.org/keywords/gene-silencing","display_name":"Gene silencing","score":0.4321223795413971},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.426588237285614},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.362392783164978},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.31427907943725586},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2968548536300659},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.27474647760391235},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10658198595046997}],"concepts":[{"id":"https://openalex.org/C186310378","wikidata":"https://www.wikidata.org/wiki/Q941796","display_name":"Psychological repression","level":4,"score":0.9126088619232178},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7315976619720459},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.6391465663909912},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.63631671667099},{"id":"https://openalex.org/C89604277","wikidata":"https://www.wikidata.org/wiki/Q424345","display_name":"Untranslated region","level":4,"score":0.5702590942382812},{"id":"https://openalex.org/C22667442","wikidata":"https://www.wikidata.org/wiki/Q3272830","display_name":"Three prime untranslated region","level":5,"score":0.46655625104904175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.451140433549881},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44317278265953064},{"id":"https://openalex.org/C119056186","wikidata":"https://www.wikidata.org/wiki/Q1431332","display_name":"Gene silencing","level":3,"score":0.4321223795413971},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.426588237285614},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.362392783164978},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.31427907943725586},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2968548536300659},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.27474647760391235},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10658198595046997}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1021","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1021","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33320173","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33320173","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1879501137","https://openalex.org/W1978134915","https://openalex.org/W1997379339","https://openalex.org/W1998819524","https://openalex.org/W2016214324","https://openalex.org/W2018590530","https://openalex.org/W2046314136","https://openalex.org/W2059073003","https://openalex.org/W2060421156","https://openalex.org/W2067765119","https://openalex.org/W2075995228","https://openalex.org/W2081373396","https://openalex.org/W2083381199","https://openalex.org/W2086157203","https://openalex.org/W2086471971","https://openalex.org/W2094253263","https://openalex.org/W2099662046","https://openalex.org/W2105575738","https://openalex.org/W2107804881","https://openalex.org/W2123716127","https://openalex.org/W2124985265","https://openalex.org/W2128551987","https://openalex.org/W2128989640","https://openalex.org/W2134629862","https://openalex.org/W2150395782","https://openalex.org/W2159793493","https://openalex.org/W2162674813","https://openalex.org/W2163106706","https://openalex.org/W2168173728","https://openalex.org/W2173732482","https://openalex.org/W2341291028","https://openalex.org/W2346311008","https://openalex.org/W2407848977","https://openalex.org/W2534106100","https://openalex.org/W2544684176","https://openalex.org/W2767546566","https://openalex.org/W2894328098","https://openalex.org/W4211064852","https://openalex.org/W6806115372"],"related_works":["https://openalex.org/W2052676455","https://openalex.org/W1978134915","https://openalex.org/W2765100145","https://openalex.org/W2123063336","https://openalex.org/W1968821924","https://openalex.org/W2106830798","https://openalex.org/W2141856214","https://openalex.org/W35524438","https://openalex.org/W1951464003","https://openalex.org/W2613992235"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}