{"id":"https://openalex.org/W3113162057","doi":"https://doi.org/10.1093/bioinformatics/btaa1016","title":"Liftoff: accurate mapping of gene annotations","display_name":"Liftoff: accurate mapping of gene annotations","publication_year":2020,"publication_date":"2020-11-24","ids":{"openalex":"https://openalex.org/W3113162057","doi":"https://doi.org/10.1093/bioinformatics/btaa1016","mag":"3113162057","pmid":"https://pubmed.ncbi.nlm.nih.gov/33320174"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1016","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1639/39119363/btaa1016.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1639/39119363/btaa1016.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063791362","display_name":"Alaina Shumate","orcid":"https://orcid.org/0000-0002-4450-1857"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alaina Shumate","raw_affiliation_strings":["Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University , Baltimore, MD 21211, USA","Department of Biomedical Engineering, Johns Hopkins University , Baltimore, MD 21218, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University , Baltimore, MD 21211, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University , Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010384159","display_name":"Steven L. Salzberg","orcid":"https://orcid.org/0000-0002-8859-7432"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven L Salzberg","raw_affiliation_strings":["Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University , Baltimore, MD 21211, USA","Department of Biomedical Engineering, Johns Hopkins University , Baltimore, MD 21218, USA","Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University , Baltimore, MD 21205, USA","Department of Computer Science, Johns Hopkins University , Baltimore, MD 21218, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University , Baltimore, MD 21211, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University , Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University , Baltimore, MD 21205, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Computer Science, Johns Hopkins University , Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5063791362"],"corresponding_institution_ids":["https://openalex.org/I145311948"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":30.3468,"has_fulltext":true,"cited_by_count":1054,"citation_normalized_percentile":{"value":0.99858659,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"37","issue":"12","first_page":"1639","last_page":"1643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5673385858535767},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4987478256225586},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4183090925216675},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32826149463653564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2538481652736664},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18491894006729126}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5673385858535767},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4987478256225586},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4183090925216675},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32826149463653564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2538481652736664},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18491894006729126}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1016","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1639/39119363/btaa1016.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33320174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33320174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8289374","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8289374","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1016","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1639/39119363/btaa1016.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1914338789","display_name":null,"funder_award_id":"R01-HG006677","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G632460639","display_name":null,"funder_award_id":"HG006677","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6682173768","display_name":null,"funder_award_id":"R35-GM130151","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3113162057.pdf","grobid_xml":"https://content.openalex.org/works/W3113162057.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1689369637","https://openalex.org/W2085275533","https://openalex.org/W2092138236","https://openalex.org/W2096465161","https://openalex.org/W2101071606","https://openalex.org/W2132522861","https://openalex.org/W2169528473","https://openalex.org/W2580314844","https://openalex.org/W2623168030","https://openalex.org/W2789843538","https://openalex.org/W2898598946","https://openalex.org/W2950150251","https://openalex.org/W2952265064","https://openalex.org/W2974143425","https://openalex.org/W3009293561","https://openalex.org/W3014837662","https://openalex.org/W3022572641","https://openalex.org/W3030496926","https://openalex.org/W3048465966","https://openalex.org/W4233582454"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":76},{"year":2025,"cited_by_count":287},{"year":2024,"cited_by_count":342},{"year":2023,"cited_by_count":172},{"year":2022,"cited_by_count":111},{"year":2021,"cited_by_count":63},{"year":2020,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-22T08:38:42.863108","created_date":"2025-10-10T00:00:00"}
