{"id":"https://openalex.org/W3114734220","doi":"https://doi.org/10.1093/bioinformatics/btaa1012","title":"RCSB Protein Data Bank 1D tools and services","display_name":"RCSB Protein Data Bank 1D tools and services","publication_year":2020,"publication_date":"2020-11-25","ids":{"openalex":"https://openalex.org/W3114734220","doi":"https://doi.org/10.1093/bioinformatics/btaa1012","mag":"3114734220","pmid":"https://pubmed.ncbi.nlm.nih.gov/33313665"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1012","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5526/36856041/btaa1012.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5526/36856041/btaa1012.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007270631","display_name":"Joan Segura","orcid":"https://orcid.org/0000-0001-5593-735X"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joan Segura","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061045572","display_name":"Yana Rose","orcid":"https://orcid.org/0000-0003-1018-5718"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yana Rose","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043891987","display_name":"John Westbrook","orcid":"https://orcid.org/0000-0002-6686-5475"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Westbrook","raw_affiliation_strings":["Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA","Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey ,\u00a0Piscataway, NJ 08854, USA","Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey ,\u00a0Piscataway, NJ 08854, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068648875","display_name":"S.K. Burley","orcid":"https://orcid.org/0000-0002-2487-9713"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen K Burley","raw_affiliation_strings":["Cancer Institute of New Jersey, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901, USA","Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA","Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA","Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey ,\u00a0Piscataway, NJ 08854, USA","Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Cancer Institute of New Jersey, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey ,\u00a0Piscataway, NJ 08854, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003460293","display_name":"Jos\u00e9 M. Duarte","orcid":"https://orcid.org/0000-0002-9544-5621"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jose M Duarte","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007270631"],"corresponding_institution_ids":["https://openalex.org/I181653535"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3349,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.80699371,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"36","issue":"22-23","first_page":"5526","last_page":"5527"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.905809760093689},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.766753613948822},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7641758918762207},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7108900547027588},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6857542395591736},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6219638586044312},{"id":"https://openalex.org/keywords/collaboratory","display_name":"Collaboratory","score":0.47130951285362244},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4243605136871338},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4100547730922699},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3586682677268982},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32802388072013855},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.20408093929290771},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1204783022403717},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11942708492279053}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.905809760093689},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.766753613948822},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7641758918762207},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7108900547027588},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6857542395591736},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6219638586044312},{"id":"https://openalex.org/C2776787376","wikidata":"https://www.wikidata.org/wiki/Q5145870","display_name":"Collaboratory","level":2,"score":0.47130951285362244},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4243605136871338},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4100547730922699},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3586682677268982},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32802388072013855},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.20408093929290771},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1204783022403717},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11942708492279053},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1012","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5526/36856041/btaa1012.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33313665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33313665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1853381","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1853381","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1986563","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1986563","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8016458","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8016458","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1012","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5526/36856041/btaa1012.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3433290013","display_name":null,"funder_award_id":"DBI-1832184","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4562230808","display_name":null,"funder_award_id":"R01GM133198","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6928499274","display_name":null,"funder_award_id":"DE-SC0019749","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3114734220.pdf","grobid_xml":"https://content.openalex.org/works/W3114734220.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2018481490","https://openalex.org/W2131924932","https://openalex.org/W2158915449","https://openalex.org/W2507275446","https://openalex.org/W2593184757","https://openalex.org/W2789456368","https://openalex.org/W2791740716","https://openalex.org/W2898364362","https://openalex.org/W2900674118","https://openalex.org/W2913093503","https://openalex.org/W3003305204","https://openalex.org/W3136918052","https://openalex.org/W4248216371","https://openalex.org/W4250359879"],"related_works":["https://openalex.org/W2518314460","https://openalex.org/W102940356","https://openalex.org/W3132544722","https://openalex.org/W2022374214","https://openalex.org/W3181892255","https://openalex.org/W2916669734","https://openalex.org/W4232154957","https://openalex.org/W1529796813","https://openalex.org/W2225560680","https://openalex.org/W4292058683"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
