{"id":"https://openalex.org/W3118004748","doi":"https://doi.org/10.1093/bioinformatics/btaa1011","title":"dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit","display_name":"dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit","publication_year":2020,"publication_date":"2020-11-25","ids":{"openalex":"https://openalex.org/W3118004748","doi":"https://doi.org/10.1093/bioinformatics/btaa1011","mag":"3118004748","pmid":"https://pubmed.ncbi.nlm.nih.gov/33313640"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5535/36856044/btaa1011.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5535/36856044/btaa1011.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067222456","display_name":"Daniel Bunis","orcid":"https://orcid.org/0000-0002-0010-1616"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210150380","display_name":"Broad Center","ror":"https://ror.org/04tbrah05","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210150380"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel G Bunis","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA, USA","Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research , , San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research , , San Francisco, CA, USA","institution_ids":["https://openalex.org/I4210150380"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045539066","display_name":"Jared Andrews","orcid":"https://orcid.org/0000-0002-0780-6248"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared Andrews","raw_affiliation_strings":["Department of Pathology and Immunology, Washington University in St. Louis School of Medicine , St. Louis, MO, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Immunology, Washington University in St. Louis School of Medicine , St. Louis, MO, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087928119","display_name":"Gabriela K. Fragiadakis","orcid":"https://orcid.org/0000-0001-9703-2591"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gabriela K Fragiadakis","raw_affiliation_strings":["Department of Medicine, Division of Rheumatology , San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Division of Rheumatology , San Francisco, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028568479","display_name":"Trevor D. Burt","orcid":"https://orcid.org/0000-0001-7933-529X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210150380","display_name":"Broad Center","ror":"https://ror.org/04tbrah05","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210150380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trevor D Burt","raw_affiliation_strings":["Department of Pediatrics, Division of Neonatology and the Children\u2019s Health and Discovery Initiative, Duke University School of Medicine , Durham, NC, USA","Department of Pediatrics, Division of Neonatology, University of California, San Francisco , San Francisco, CA, USA","Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research , , San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Division of Neonatology and the Children\u2019s Health and Discovery Initiative, Duke University School of Medicine , Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Pediatrics, Division of Neonatology, University of California, San Francisco , San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research , , San Francisco, CA, USA","institution_ids":["https://openalex.org/I4210150380"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086033147","display_name":"Marina Sirota","orcid":"https://orcid.org/0000-0002-7246-6083"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marina Sirota","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA, USA","Department of Pediatrics, Division of Neonatology, University of California, San Francisco , San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, Division of Neonatology, University of California, San Francisco , San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067222456"],"corresponding_institution_ids":["https://openalex.org/I180670191","https://openalex.org/I4210150380"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.7598,"has_fulltext":false,"cited_by_count":243,"citation_normalized_percentile":{"value":0.98344467,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"22-23","first_page":"5535","last_page":"5536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9540941715240479},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8576834201812744},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7792571783065796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7572655081748962},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.6671465635299683},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6587865352630615},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.519268274307251},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.49857211112976074},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48812445998191833},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4560726284980774},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.42466291785240173},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3782098889350891},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16898909211158752},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14242666959762573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10933849215507507}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9540941715240479},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8576834201812744},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7792571783065796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7572655081748962},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.6671465635299683},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6587865352630615},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.519268274307251},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.49857211112976074},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48812445998191833},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4560726284980774},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.42466291785240173},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3782098889350891},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16898909211158752},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14242666959762573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10933849215507507},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5535/36856044/btaa1011.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33313640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33313640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt8s64w4hb","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/8s64w4hb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 36, iss 22-23","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8016464","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8016464","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1011","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5535/36856044/btaa1011.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306133","display_name":"Burroughs Wellcome Fund","ror":"https://ror.org/01d35cw23"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3118004748.pdf","grobid_xml":"https://content.openalex.org/works/W3118004748.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1551643567","https://openalex.org/W2114104545","https://openalex.org/W2179438025","https://openalex.org/W2523620612","https://openalex.org/W2794480084","https://openalex.org/W2949177718","https://openalex.org/W2989807288","https://openalex.org/W4384296545","https://openalex.org/W6727363061"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W3156537409","https://openalex.org/W2140163842","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2098339479","https://openalex.org/W3118004748"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":71},{"year":2024,"cited_by_count":64},{"year":2023,"cited_by_count":48},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":14}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
