{"id":"https://openalex.org/W3005546323","doi":"https://doi.org/10.1093/bioinformatics/btaa093","title":"Methplotlib: analysis of modified nucleotides from nanopore sequencing","display_name":"Methplotlib: analysis of modified nucleotides from nanopore sequencing","publication_year":2020,"publication_date":"2020-02-05","ids":{"openalex":"https://openalex.org/W3005546323","doi":"https://doi.org/10.1093/bioinformatics/btaa093","mag":"3005546323","pmid":"https://pubmed.ncbi.nlm.nih.gov/32053166"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa093","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa093","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3236/33204195/btaa093.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3236/33204195/btaa093.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069569259","display_name":"Wouter De Coster","orcid":"https://orcid.org/0000-0002-5248-8197"},"institutions":[{"id":"https://openalex.org/I4210132484","display_name":"VIB-UAntwerp Center for Molecular Neurology","ror":"https://ror.org/041x7eh14","country_code":"BE","type":"facility","lineage":["https://openalex.org/I149213910","https://openalex.org/I2802017950","https://openalex.org/I4210132484"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Wouter De Coster","raw_affiliation_strings":["VIB, Center for Molecular Neurology , Antwerp 2610, Belgium"],"affiliations":[{"raw_affiliation_string":"VIB, Center for Molecular Neurology , Antwerp 2610, Belgium","institution_ids":["https://openalex.org/I4210132484"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060943162","display_name":"Endre Bakken Stovner","orcid":"https://orcid.org/0000-0001-7404-9884"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Endre Bakken Stovner","raw_affiliation_strings":["Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology , Trondheim 7013, Norway","Department of Computer Science , Norwegian University of Science and Technology, Trondheim 7013, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology , Trondheim 7013, Norway","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"Department of Computer Science , Norwegian University of Science and Technology, Trondheim 7013, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018166947","display_name":"Mojca Stra\u017ei\u0161ar","orcid":"https://orcid.org/0000-0001-8046-3408"},"institutions":[{"id":"https://openalex.org/I4210132484","display_name":"VIB-UAntwerp Center for Molecular Neurology","ror":"https://ror.org/041x7eh14","country_code":"BE","type":"facility","lineage":["https://openalex.org/I149213910","https://openalex.org/I2802017950","https://openalex.org/I4210132484"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Mojca Strazisar","raw_affiliation_strings":["VIB, Center for Molecular Neurology , Antwerp 2610, Belgium"],"affiliations":[{"raw_affiliation_string":"VIB, Center for Molecular Neurology , Antwerp 2610, Belgium","institution_ids":["https://openalex.org/I4210132484"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5069569259"],"corresponding_institution_ids":["https://openalex.org/I4210132484"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1735,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.88093234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"10","first_page":"3236","last_page":"3238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7772640585899353},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.704034149646759},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.591759204864502},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.541601836681366},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.5353676676750183},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.5223397016525269},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5075832605361938},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.47748279571533203},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.47564077377319336},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4291648864746094},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3745082914829254},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22350695729255676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21752789616584778},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19272032380104065},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.15512767434120178}],"concepts":[{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7772640585899353},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.704034149646759},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.591759204864502},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.541601836681366},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.5353676676750183},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.5223397016525269},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5075832605361938},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.47748279571533203},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.47564077377319336},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4291648864746094},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3745082914829254},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22350695729255676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21752789616584778},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19272032380104065},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.15512767434120178}],"mesh":[{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa093","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa093","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3236/33204195/btaa093.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32053166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32053166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7214038","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7214038","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa093","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa093","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3236/33204195/btaa093.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3005546323.pdf","grobid_xml":"https://content.openalex.org/works/W3005546323.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W2059417030","https://openalex.org/W2098500609","https://openalex.org/W2099025616","https://openalex.org/W2101234009","https://openalex.org/W2110417468","https://openalex.org/W2117131162","https://openalex.org/W2146292423","https://openalex.org/W2259938310","https://openalex.org/W2590641123","https://openalex.org/W2591367881","https://openalex.org/W2765745983","https://openalex.org/W2790527784","https://openalex.org/W2898598946","https://openalex.org/W2914466374","https://openalex.org/W2948863695","https://openalex.org/W2949121208","https://openalex.org/W2950063384","https://openalex.org/W2950827710","https://openalex.org/W2963037859","https://openalex.org/W2964830826","https://openalex.org/W2964844385","https://openalex.org/W2965256346","https://openalex.org/W2968658941","https://openalex.org/W2979910146","https://openalex.org/W4225743429","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4309247532","https://openalex.org/W2951541096","https://openalex.org/W2790902885","https://openalex.org/W624632001","https://openalex.org/W3209266349","https://openalex.org/W2514454343","https://openalex.org/W3096946169","https://openalex.org/W2113128227","https://openalex.org/W132773903","https://openalex.org/W4234464002"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}