{"id":"https://openalex.org/W3004913973","doi":"https://doi.org/10.1093/bioinformatics/btaa079","title":"Census of halide-binding sites in protein structures","display_name":"Census of halide-binding sites in protein structures","publication_year":2020,"publication_date":"2020-01-29","ids":{"openalex":"https://openalex.org/W3004913973","doi":"https://doi.org/10.1093/bioinformatics/btaa079","mag":"3004913973","pmid":"https://pubmed.ncbi.nlm.nih.gov/32022861"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa079","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3064/33204472/btaa079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3064/33204472/btaa079.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028424487","display_name":"Rostislav Skitchenko","orcid":"https://orcid.org/0000-0002-7203-8206"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Rostislav K Skitchenko","raw_affiliation_strings":["Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia"],"raw_orcid":"https://orcid.org/0000-0002-7203-8206","affiliations":[{"raw_affiliation_string":"Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081901394","display_name":"Dmitrii Usoltsev","orcid":"https://orcid.org/0000-0001-8072-310X"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Dmitrii Usoltsev","raw_affiliation_strings":["Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089858405","display_name":"M. V. Uspenskaya","orcid":"https://orcid.org/0000-0003-2510-2639"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mayya Uspenskaya","raw_affiliation_strings":["Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Andrey V Kajava","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210113016","display_name":"Centre de Recherche en Biologie cellulaire de Montpellier","ror":"https://ror.org/01xpc6869","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210113016"]}],"countries":["FR","RU"],"is_corresponding":true,"raw_author_name":"Andrey V Kajava","raw_affiliation_strings":["Centre de Recherche en Biologie cellulaire de Montpellier (CRBM), UMR 5237 CNRS, Universite Montpellier , Montpellier 34293, France","Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre de Recherche en Biologie cellulaire de Montpellier (CRBM), UMR 5237 CNRS, Universite Montpellier , Montpellier 34293, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210113016"]},{"raw_affiliation_string":"Institute BioEngineering, ITMO University , Saint-Petersburg 197101, Russia","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069067295","display_name":"Albert Guskov","orcid":"https://orcid.org/0000-0003-2340-2216"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Albert Guskov","raw_affiliation_strings":["Groningen Biomolecular Sciences & Biotechnology Institute, University of Groningen , Groningen 9747 AG, the Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-2340-2216","affiliations":[{"raw_affiliation_string":"Groningen Biomolecular Sciences & Biotechnology Institute, University of Groningen , Groningen 9747 AG, the Netherlands","institution_ids":["https://openalex.org/I169381384"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069067295"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I169381384","https://openalex.org/I173089394","https://openalex.org/I19894307","https://openalex.org/I4210113016"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8201,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.69158659,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"10","first_page":"3064","last_page":"3071"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.14219999313354492,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.14219999313354492,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.09589999914169312,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.09099999815225601,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/halide","display_name":"Halide","score":0.9729927182197571},{"id":"https://openalex.org/keywords/moiety","display_name":"Moiety","score":0.5782665610313416},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5204648971557617},{"id":"https://openalex.org/keywords/halogen","display_name":"Halogen","score":0.5053256154060364},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4627326726913452},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4465298354625702},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.42169952392578125},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3275466859340668},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.2606751620769501},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20042848587036133},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19459804892539978},{"id":"https://openalex.org/keywords/inorganic-chemistry","display_name":"Inorganic chemistry","score":0.193599134683609},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1608884632587433},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.13630837202072144},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1323612630367279},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07896760106086731}],"concepts":[{"id":"https://openalex.org/C171560689","wikidata":"https://www.wikidata.org/wiki/Q193086","display_name":"Halide","level":2,"score":0.9729927182197571},{"id":"https://openalex.org/C2776568683","wikidata":"https://www.wikidata.org/wiki/Q23005640","display_name":"Moiety","level":2,"score":0.5782665610313416},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5204648971557617},{"id":"https://openalex.org/C46062151","wikidata":"https://www.wikidata.org/wiki/Q19605","display_name":"Halogen","level":3,"score":0.5053256154060364},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4627326726913452},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4465298354625702},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.42169952392578125},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3275466859340668},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.2606751620769501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20042848587036133},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19459804892539978},{"id":"https://openalex.org/C179104552","wikidata":"https://www.wikidata.org/wiki/Q11165","display_name":"Inorganic chemistry","level":1,"score":0.193599134683609},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1608884632587433},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.13630837202072144},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1323612630367279},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07896760106086731},{"id":"https://openalex.org/C2780263894","wikidata":"https://www.wikidata.org/wiki/Q335268","display_name":"Alkyl","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001965","descriptor_name":"Bromides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001965","descriptor_name":"Bromides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001965","descriptor_name":"Bromides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007454","descriptor_name":"Iodides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007454","descriptor_name":"Iodides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007454","descriptor_name":"Iodides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019352","descriptor_name":"Censuses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019352","descriptor_name":"Censuses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019352","descriptor_name":"Censuses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btaa079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa079","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3064/33204472/btaa079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32022861","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32022861","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.rug.nl:publications/e6c551c2-3240-4664-8bd6-df4a0c303656","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/e6c551c2-3240-4664-8bd6-df4a0c303656","pdf_url":"https://pure.rug.nl/ws/files/127607961/btaa079_1_.pdf","source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Skitchenko, R K, Usoltsev, D, Uspenskaya, M, Kajava, A V & Guskov, A 2020, 'Census of halide-binding sites in protein structures', Bioinformatics (Oxford, England), vol. 36, no. 10, pp. 3064-3071. https://doi.org/10.1093/bioinformatics/btaa079","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-03089275v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03089275","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2020, 36 (10), pp.3064-3071. &#x27E8;10.1093/bioinformatics/btaa079&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7214031","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7214031","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.rug.nl:openaire/e6c551c2-3240-4664-8bd6-df4a0c303656","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/e6c551c2-3240-4664-8bd6-df4a0c303656","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Skitchenko, R K, Usoltsev, D, Uspenskaya, M, Kajava, A V & Guskov, A 2020, 'Census of halide-binding sites in protein structures', Bioinformatics (Oxford, England), vol. 36, no. 10, pp. 3064-3071. https://doi.org/10.1093/bioinformatics/btaa079","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa079","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3064/33204472/btaa079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3004913973.pdf"},"referenced_works_count":115,"referenced_works":["https://openalex.org/W171832131","https://openalex.org/W1483091000","https://openalex.org/W1494114085","https://openalex.org/W1509035510","https://openalex.org/W1536454035","https://openalex.org/W1576503013","https://openalex.org/W1592962814","https://openalex.org/W1818001455","https://openalex.org/W1893822674","https://openalex.org/W1936884478","https://openalex.org/W1945091806","https://openalex.org/W1965064913","https://openalex.org/W1966112781","https://openalex.org/W1968919215","https://openalex.org/W1976383678","https://openalex.org/W1981154348","https://openalex.org/W1982971004","https://openalex.org/W1985081198","https://openalex.org/W1985596675","https://openalex.org/W1992126003","https://openalex.org/W1992816624","https://openalex.org/W1993692047","https://openalex.org/W1995215769","https://openalex.org/W1996983400","https://openalex.org/W2010643327","https://openalex.org/W2011722510","https://openalex.org/W2018211671","https://openalex.org/W2021530053","https://openalex.org/W2025700341","https://openalex.org/W2026227988","https://openalex.org/W2028478463","https://openalex.org/W2040385059","https://openalex.org/W2041850633","https://openalex.org/W2043411229","https://openalex.org/W2045045769","https://openalex.org/W2047283891","https://openalex.org/W2051069807","https://openalex.org/W2058592878","https://openalex.org/W2059131094","https://openalex.org/W2061057944","https://openalex.org/W2064171042","https://openalex.org/W2065238679","https://openalex.org/W2067857310","https://openalex.org/W2068521700","https://openalex.org/W2070462922","https://openalex.org/W2077481002","https://openalex.org/W2080103821","https://openalex.org/W2082444455","https://openalex.org/W2089988952","https://openalex.org/W2091685698","https://openalex.org/W2095831758","https://openalex.org/W2101591373","https://openalex.org/W2106127794","https://openalex.org/W2106143293","https://openalex.org/W2107783446","https://openalex.org/W2108794951","https://openalex.org/W2112166478","https://openalex.org/W2114495297","https://openalex.org/W2116353330","https://openalex.org/W2120242708","https://openalex.org/W2127411468","https://openalex.org/W2129556352","https://openalex.org/W2132502501","https://openalex.org/W2135221247","https://openalex.org/W2137629661","https://openalex.org/W2138273994","https://openalex.org/W2140757471","https://openalex.org/W2142184469","https://openalex.org/W2142319710","https://openalex.org/W2145808358","https://openalex.org/W2153024016","https://openalex.org/W2159133561","https://openalex.org/W2159944520","https://openalex.org/W2160332087","https://openalex.org/W2162340160","https://openalex.org/W2162362319","https://openalex.org/W2164672515","https://openalex.org/W2164702761","https://openalex.org/W2167590372","https://openalex.org/W2167807799","https://openalex.org/W2168051827","https://openalex.org/W2168987076","https://openalex.org/W2169240396","https://openalex.org/W2197742416","https://openalex.org/W2253581743","https://openalex.org/W2308745856","https://openalex.org/W2311160563","https://openalex.org/W2312645904","https://openalex.org/W2314983804","https://openalex.org/W2416238059","https://openalex.org/W2550362349","https://openalex.org/W2597846653","https://openalex.org/W2602180809","https://openalex.org/W2612429297","https://openalex.org/W2765205218","https://openalex.org/W2788186191","https://openalex.org/W2794489051","https://openalex.org/W2795923478","https://openalex.org/W2805918882","https://openalex.org/W2805997389","https://openalex.org/W2886177593","https://openalex.org/W2896110620","https://openalex.org/W2898436289","https://openalex.org/W2899867996","https://openalex.org/W2913200772","https://openalex.org/W2914915930","https://openalex.org/W2949242183","https://openalex.org/W2951964187","https://openalex.org/W3133211473","https://openalex.org/W4294576814","https://openalex.org/W6606999581","https://openalex.org/W6698822420","https://openalex.org/W6716462514","https://openalex.org/W6842460099","https://openalex.org/W6903554907"],"related_works":["https://openalex.org/W2376082430","https://openalex.org/W2299503928","https://openalex.org/W2003901887","https://openalex.org/W2167448627","https://openalex.org/W4237342542","https://openalex.org/W135533012","https://openalex.org/W2076702115","https://openalex.org/W2329778696","https://openalex.org/W2059614870","https://openalex.org/W107427781"],"abstract_inverted_index":{"MOTIVATION:":[0],"Halides":[1],"are":[2,20,98,111,190],"negatively":[3],"charged":[4],"ions":[5],"of":[6,47,60,82,96,105,154],"halogens,":[7],"forming":[8],"fluorides":[9],"(F-),":[10],"chlorides":[11],"(Cl-),":[12],"bromides":[13],"(Br-)":[14],"and":[15,23,27,35,139,158],"iodides":[16],"(I-).":[17],"These":[18],"anions":[19],"quite":[21],"reactive":[22],"interact":[24],"both":[25],"specifically":[26],"non-specifically":[28],"with":[29,133],"proteins.":[30,51],"Despite":[31],"their":[32],"ubiquitous":[33],"presence":[34],"important":[36],"roles":[37],"in":[38,67,85,129,174],"protein":[39],"function,":[40],"little":[41],"is":[42,122],"known":[43],"about":[44],"the":[45,58,65,68,79,88,102,130,152],"preferences":[46,114],"halides":[48,97,116,164],"binding":[49,131],"to":[50],"To":[52],"address":[53],"this":[54,175],"problem,":[55],"we":[56],"performed":[57],"analysis":[59,81,92,153],"halide-protein":[61,156],"interactions,":[62],"based":[63],"on":[64,163],"entries":[66],"Protein":[69],"Data":[70],"Bank.":[71],"RESULTS:":[72],"We":[73],"have":[74],"compiled":[75],"a":[76,123,134,149],"pipeline":[77,144,182],"for":[78,117,126,151],"quick":[80],"halide-binding":[83],"sites":[84],"proteins":[86],"using":[87],"available":[89,191],"software.":[90],"Our":[91],"revealed":[93],"that":[94],"all":[95],"strongly":[99],"attracted":[100],"by":[101],"guanidinium":[103],"moiety":[104],"arginine":[106],"side":[107],"chains,":[108],"however,":[109],"there":[110,121],"also":[112],"certain":[113,124],"among":[115],"other":[118],"partners.":[119],"Furthermore,":[120],"preference":[125],"coordination":[127,137],"numbers":[128,138],"sites,":[132],"correlation":[135],"between":[136],"amino":[140],"acid":[141],"composition.":[142],"This":[143],"can":[145,177],"be":[146,178],"used":[147],"as":[148,165],"tool":[150],"specific":[155],"interactions":[157],"assist":[159],"phasing":[160],"experiments":[161],"relying":[162],"anomalous":[166],"scatters.":[167],"AVAILABILITY":[168],"AND":[169],"IMPLEMENTATION:":[170],"All":[171],"data":[172,189],"described":[173],"article":[176],"reproduced":[179],"via":[180],"complied":[181],"published":[183],"at":[184,192],"https://github.com/rostkick/Halide_sites/blob/master/README.md.":[185],"SUPPLEMENTARY":[186],"INFORMATION:":[187],"Supplementary":[188],"Bioinformatics":[193],"online.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-25T17:18:41.151588","created_date":"2025-10-10T00:00:00"}
