{"id":"https://openalex.org/W2998890058","doi":"https://doi.org/10.1093/bioinformatics/btaa029","title":"3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images","display_name":"3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images","publication_year":2020,"publication_date":"2020-01-15","ids":{"openalex":"https://openalex.org/W2998890058","doi":"https://doi.org/10.1093/bioinformatics/btaa029","mag":"2998890058","pmid":"https://pubmed.ncbi.nlm.nih.gov/31950986"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa029","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2948/33180962/btaa029.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2948/33180962/btaa029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087738988","display_name":"Ervin Tasn\u00e1di","orcid":"https://orcid.org/0000-0002-4713-5397"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Ervin A Tasnadi","raw_affiliation_strings":["Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary"],"affiliations":[{"raw_affiliation_string":"Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054868376","display_name":"T\u00edmea T\u00f3th","orcid":"https://orcid.org/0000-0002-4967-5186"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Timea Toth","raw_affiliation_strings":["Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary"],"affiliations":[{"raw_affiliation_string":"Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035667473","display_name":"M\u00e1ria Kov\u00e1cs","orcid":"https://orcid.org/0000-0001-7423-4115"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Maria Kovacs","raw_affiliation_strings":["Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary"],"affiliations":[{"raw_affiliation_string":"Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087030564","display_name":"\u00c1kos Di\u00f3sdi","orcid":"https://orcid.org/0000-0002-3118-5576"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Akos Diosdi","raw_affiliation_strings":["Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary"],"affiliations":[{"raw_affiliation_string":"Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059318668","display_name":"Francesco Pampaloni","orcid":"https://orcid.org/0000-0003-4357-7320"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Francesco Pampaloni","raw_affiliation_strings":["Buchmann Institute for Molecular Life Sciences (BMLS) , Goethe University of Frankfurt, DE-60438 Frankfurt, Germany"],"affiliations":[{"raw_affiliation_string":"Buchmann Institute for Molecular Life Sciences (BMLS) , Goethe University of Frankfurt, DE-60438 Frankfurt, Germany","institution_ids":["https://openalex.org/I114090438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104474151","display_name":"J\u00f3zsef Moln\u00e1r","orcid":"https://orcid.org/0000-0002-9185-9376"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Jozsef Molnar","raw_affiliation_strings":["Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary"],"affiliations":[{"raw_affiliation_string":"Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062293774","display_name":"Filippo Piccinini","orcid":"https://orcid.org/0000-0002-0371-7782"},"institutions":[{"id":"https://openalex.org/I4210097834","display_name":"Istituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori","ror":"https://ror.org/013wkc921","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210097834","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Filippo Piccinini","raw_affiliation_strings":["Istituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori (IRST) IRCCS , I-47014 Meldola (FC), Italy"],"affiliations":[{"raw_affiliation_string":"Istituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori (IRST) IRCCS , I-47014 Meldola (FC), Italy","institution_ids":["https://openalex.org/I4210097834","https://openalex.org/I4210153126"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056154163","display_name":"P\u00e9ter Horv\u00e1th","orcid":"https://orcid.org/0000-0002-4492-1798"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107997","display_name":"Finland University","ror":"https://ror.org/014rks409","country_code":"FI","type":"education","lineage":["https://openalex.org/I4210107997"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI","HU"],"is_corresponding":true,"raw_author_name":"Peter Horvath","raw_affiliation_strings":["Institute for Molecular Medicine Finland University of Helsinki , FI-00014 Helsinki, Finland","Single-Cell Technologies Ltd , H-6726 Szeged, Hungary","Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland University of Helsinki , FI-00014 Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I4210107997","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Single-Cell Technologies Ltd , H-6726 Szeged, Hungary","institution_ids":[]},{"raw_affiliation_string":"Synthetic and System Biology Unit , Biological Research Centre (BRC), Szeged H-6726, Hungary","institution_ids":["https://openalex.org/I2800351701"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5056154163","https://openalex.org/A5062293774"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800351701","https://openalex.org/I4210097834","https://openalex.org/I4210107997","https://openalex.org/I4210133586","https://openalex.org/I4210153126"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.0716,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.93660559,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"9","first_page":"2948","last_page":"2949"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8567238450050354},{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.7678952217102051},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7525713443756104},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.6025410890579224},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.555461585521698},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5233663320541382},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4556148946285248},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.42959949374198914},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.37690240144729614},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3633801341056824},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3250827193260193},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16314169764518738},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11763507127761841}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8567238450050354},{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.7678952217102051},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7525713443756104},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.6025410890579224},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.555461585521698},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5233663320541382},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4556148946285248},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.42959949374198914},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.37690240144729614},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3633801341056824},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3250827193260193},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16314169764518738},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11763507127761841},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa029","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2948/33180962/btaa029.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31950986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31950986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/762189","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/article/36/9/2948/5709038","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:helda.helsinki.fi:10138/316285","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/316285","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7203751","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7203751","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa029","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2948/33180962/btaa029.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307864","display_name":"International Union Against Cancer","ror":"https://ror.org/026dp0v66"},{"id":"https://openalex.org/F4320311896","display_name":"Union for International Cancer Control","ror":"https://ror.org/026dp0v66"},{"id":"https://openalex.org/F4320335265","display_name":"Institute of Molecular and Cell Biology","ror":"https://ror.org/04xpsrn94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2998890058.pdf","grobid_xml":"https://content.openalex.org/works/W2998890058.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1535417994","https://openalex.org/W2147728748","https://openalex.org/W2236643502","https://openalex.org/W2277476622","https://openalex.org/W2326840500","https://openalex.org/W2821017730","https://openalex.org/W2921185333","https://openalex.org/W3022215132","https://openalex.org/W6695010493"],"related_works":["https://openalex.org/W3153292769","https://openalex.org/W2045444909","https://openalex.org/W1516398359","https://openalex.org/W1901656956","https://openalex.org/W2990805456","https://openalex.org/W2941659365","https://openalex.org/W4239210160","https://openalex.org/W2376300433","https://openalex.org/W4242605858","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}