{"id":"https://openalex.org/W3001265129","doi":"https://doi.org/10.1093/bioinformatics/btaa014","title":"Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity","display_name":"Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity","publication_year":2020,"publication_date":"2020-01-18","ids":{"openalex":"https://openalex.org/W3001265129","doi":"https://doi.org/10.1093/bioinformatics/btaa014","mag":"3001265129","pmid":"https://pubmed.ncbi.nlm.nih.gov/31971577"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2755/33180926/btaa014.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2755/33180926/btaa014.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059809364","display_name":"Jia-Juan Tu","orcid":"https://orcid.org/0000-0002-7912-6030"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia-Juan Tu","raw_affiliation_strings":["Department of Statistics , Hubei Key Laboratory of Mathematical Sciences, School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics , Hubei Key Laboratory of Mathematical Sciences, School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030129372","display_name":"Le Ou-Yang","orcid":"https://orcid.org/0000-0003-4007-4568"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Ou-Yang","raw_affiliation_strings":["College of Electronics and Information Engineering , Shenzhen University, Shenzhen 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Electronics and Information Engineering , Shenzhen University, Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100644375","display_name":"Hong Yan","orcid":"https://orcid.org/0000-0001-9661-3095"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hong Yan","raw_affiliation_strings":["Department of Electrical Engineering , City University of Hong Kong, Hong Kong 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering , City University of Hong Kong, Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100447043","display_name":"Xiao-Fei Zhang","orcid":"https://orcid.org/0000-0002-5052-9725"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao-Fei Zhang","raw_affiliation_strings":["Department of Statistics , Hubei Key Laboratory of Mathematical Sciences, School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University) , Ministry of Education, Shanghai 200433, China"],"raw_orcid":"https://orcid.org/0000-0002-5052-9725","affiliations":[{"raw_affiliation_string":"Department of Statistics , Hubei Key Laboratory of Mathematical Sciences, School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University) , Ministry of Education, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102025009","display_name":"Hong Qin","orcid":"https://orcid.org/0000-0001-7463-2914"},"institutions":[{"id":"https://openalex.org/I158934434","display_name":"Zhongnan University of Economics and Law","ror":"https://ror.org/04yqxxq63","country_code":"CN","type":"education","lineage":["https://openalex.org/I158934434"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hong Qin","raw_affiliation_strings":["Department of Statistics , Hubei Key Laboratory of Mathematical Sciences, School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","Department of Statistics , Zhongnan University of Economics and Law, Wuhan 430073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics , Hubei Key Laboratory of Mathematical Sciences, School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Department of Statistics , Zhongnan University of Economics and Law, Wuhan 430073, China","institution_ids":["https://openalex.org/I158934434"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100447043","https://openalex.org/A5102025009"],"corresponding_institution_ids":["https://openalex.org/I158934434","https://openalex.org/I24943067","https://openalex.org/I40963666"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4068,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.57940371,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"9","first_page":"2755","last_page":"2762"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6898000240325928,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6898000240325928,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.11349999904632568,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.07810000330209732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/joint","display_name":"Joint (building)","score":0.7416995763778687},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5961020588874817},{"id":"https://openalex.org/keywords/tumor-heterogeneity","display_name":"Tumor heterogeneity","score":0.5201287865638733},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.483820378780365},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4835048019886017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3748680353164673},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30561697483062744},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23324793577194214},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.15574315190315247}],"concepts":[{"id":"https://openalex.org/C18555067","wikidata":"https://www.wikidata.org/wiki/Q8375051","display_name":"Joint (building)","level":2,"score":0.7416995763778687},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5961020588874817},{"id":"https://openalex.org/C3018028425","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumor heterogeneity","level":3,"score":0.5201287865638733},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.483820378780365},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4835048019886017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3748680353164673},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30561697483062744},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23324793577194214},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.15574315190315247},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C170154142","wikidata":"https://www.wikidata.org/wiki/Q150737","display_name":"Architectural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2755/33180926/btaa014.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31971577","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31971577","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa014","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/9/2755/33180926/btaa014.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2587881520","display_name":"\u51e0\u7c7b\u5747\u5300\u8bbe\u8ba1\u7684\u6784\u9020\u53ca\u5e94\u7528\u7814\u7a76","funder_award_id":"11871237","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4256946538","display_name":null,"funder_award_id":"JCYJ20170817095210760","funder_id":"https://openalex.org/F4320329791","funder_display_name":"Shenzhen Fundamental Research Program"},{"id":"https://openalex.org/G4434048650","display_name":null,"funder_award_id":"61602309","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4946508935","display_name":null,"funder_award_id":"9610460","funder_id":"https://openalex.org/F4320309893","funder_display_name":"City University of Hong Kong"},{"id":"https://openalex.org/G500467270","display_name":null,"funder_award_id":"CCNU18TS026","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G549144630","display_name":null,"funder_award_id":"2019A1515011384","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G6771178980","display_name":null,"funder_award_id":"2018CFB521","funder_id":"https://openalex.org/F4320322186","funder_display_name":"Natural Science Foundation of Hubei Province"},{"id":"https://openalex.org/G7534660035","display_name":null,"funder_award_id":"61402190","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8657404496","display_name":"\u57fa\u4e8e\u7a00\u758f\u6982\u7387\u56fe\u6a21\u578b\u7684\u591a\u764c\u75c7\u591a\u7ec4\u5b66\u751f\u7269\u7f51\u7edc\u6784\u5efa\u65b9\u6cd5\u7814\u7a76","funder_award_id":"11871026","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320309893","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322186","display_name":"Natural Science Foundation of Hubei Province","ror":null},{"id":"https://openalex.org/F4320329791","display_name":"Shenzhen Fundamental Research Program","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3001265129.pdf","grobid_xml":"https://content.openalex.org/works/W3001265129.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1967186439","https://openalex.org/W1967220865","https://openalex.org/W1967639437","https://openalex.org/W1972382100","https://openalex.org/W1987219048","https://openalex.org/W1987896487","https://openalex.org/W2019691808","https://openalex.org/W2049633694","https://openalex.org/W2096283457","https://openalex.org/W2115113062","https://openalex.org/W2116805437","https://openalex.org/W2130430382","https://openalex.org/W2132555912","https://openalex.org/W2135115496","https://openalex.org/W2144035153","https://openalex.org/W2152401289","https://openalex.org/W2159482845","https://openalex.org/W2165009258","https://openalex.org/W2168735334","https://openalex.org/W2170490448","https://openalex.org/W2185207072","https://openalex.org/W2267064610","https://openalex.org/W2524076512","https://openalex.org/W2607356028","https://openalex.org/W2610948411","https://openalex.org/W2777527666","https://openalex.org/W2800846444","https://openalex.org/W2807881515","https://openalex.org/W2921330004","https://openalex.org/W2947083558","https://openalex.org/W2952327506","https://openalex.org/W2962898193","https://openalex.org/W2990478267","https://openalex.org/W2997085878","https://openalex.org/W3098968501","https://openalex.org/W3204334029","https://openalex.org/W4294216483","https://openalex.org/W4301588852","https://openalex.org/W6677437772","https://openalex.org/W6684098844","https://openalex.org/W6771304717"],"related_works":["https://openalex.org/W1996130883","https://openalex.org/W2748574964","https://openalex.org/W2888483922","https://openalex.org/W2367747139","https://openalex.org/W4391102217","https://openalex.org/W2566187525","https://openalex.org/W2367150592","https://openalex.org/W2378889330","https://openalex.org/W4243585476","https://openalex.org/W2375788348"],"abstract_inverted_index":{"MOTIVATION:":[0],"Reconstruction":[1],"of":[2,43,118,155],"cancer":[3,29,64,104,123,131,186,212],"gene":[4,7,57,105,115,194],"networks":[5,106,137,200],"from":[6],"expression":[8,116],"data":[9,117,187,230],"is":[10,53,158,223],"important":[11,206],"for":[12,26,100,121],"understanding":[13],"the":[14,22,59,147,150,165,199],"mechanisms":[15],"underlying":[16],"human":[17],"cancer.":[18],"Due":[19],"to":[20,62,180,188],"heterogeneity,":[21],"tumor":[23,51],"tissue":[24],"samples":[25,120],"a":[27,94,125],"single":[28],"type":[30],"can":[31,143],"be":[32,70,144],"divided":[33],"into":[34,86],"multiple":[35,103,134],"distinct":[36],"subtypes":[37,65,132],"(inter-tumor":[38],"heterogeneity)":[39],"and":[40,45,66,83,111,133,164,191,214],"are":[41,138,231],"composed":[42],"non-cancerous":[44,126,190],"cancerous":[46,136,193],"cells":[47],"(intra-tumor":[48],"heterogeneity).":[49],"If":[50],"heterogeneity":[52,85,142],"ignored":[54],"when":[55],"inferring":[56],"networks,":[58],"edges":[60],"specific":[61],"individual":[63],"cell":[67],"types":[68],"cannot":[69],"characterized.":[71],"However,":[72],"most":[73],"existing":[74],"network":[75,127],"reconstruction":[76],"methods":[77],"do":[78],"not":[79],"simultaneously":[80,108],"take":[81],"inter-tumor":[82,110],"intra-tumor":[84,112],"account.":[87],"RESULTS:":[88],"In":[89],"this":[90],"article,":[91],"we":[92],"propose":[93],"new":[95],"Gaussian":[96],"graphical":[97],"model-based":[98],"method":[99,157,170,179,204],"jointly":[101],"estimating":[102],"by":[107,146,202],"capturing":[109],"heterogeneity.":[113],"Given":[114],"heterogeneous":[119],"different":[122,130],"subtypes,":[124],"shared":[128],"across":[129],"subtype-specific":[135,192],"estimated":[139,151,201],"jointly.":[140],"Tumor":[141],"revealed":[145],"difference":[148],"in":[149,198],"networks.":[152,195],"The":[153,181,220],"performance":[154],"our":[156,169,178,203],"first":[159],"evaluated":[160],"using":[161],"simulated":[162],"data,":[163],"results":[166],"indicate":[167],"that":[168],"outperforms":[171],"other":[172],"state-of-the-art":[173],"methods.":[174],"We":[175],"also":[176],"apply":[177],"Cancer":[182],"Genome":[183],"Atlas":[184],"breast":[185,211],"reconstruct":[189],"Hub":[196],"nodes":[197],"perform":[205],"biological":[207],"functions":[208],"associated":[209],"with":[210],"development":[213],"subtype":[215],"classification.":[216],"AVAILABILITY":[217],"AND":[218],"IMPLEMENTATION:":[219],"source":[221],"code":[222],"available":[224,232],"at":[225,233],"https://github.com/Zhangxf-ccnu/NETI2.":[226],"SUPPLEMENTARY":[227],"INFORMATION:":[228],"Supplementary":[229],"Bioinformatics":[234],"online.":[235]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
