{"id":"https://openalex.org/W2043918885","doi":"https://doi.org/10.1093/bioinformatics/3.4.325","title":"PROTEUS: a suite of programs for prediction of structural features of proteins using an Apple lie","display_name":"PROTEUS: a suite of programs for prediction of structural features of proteins using an Apple lie","publication_year":1987,"publication_date":"1987-01-01","ids":{"openalex":"https://openalex.org/W2043918885","doi":"https://doi.org/10.1093/bioinformatics/3.4.325","mag":"2043918885","pmid":"https://pubmed.ncbi.nlm.nih.gov/3453242"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/3.4.325","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/3.4.325","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078917080","display_name":"Stefano Pascarella","orcid":"https://orcid.org/0000-0002-6822-4022"},"institutions":[{"id":"https://openalex.org/I4210110528","display_name":"Institute of Molecular Biology and Pathology","ror":"https://ror.org/01nyatq71","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210110528","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Pascarella","raw_affiliation_strings":["Dipartimento di Scienze Biochimiche, Universit\u00e1 La Sapienza, Roma, Italy","Dipartmento di Scienze Biochimiche and Centro di Biologia Molecolare del Consiglio Nazionale delle Ricerche, Universit\u00e1 La Sapienza00185 Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biochimiche, Universit\u00e1 La Sapienza, Roma, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Dipartmento di Scienze Biochimiche and Centro di Biologia Molecolare del Consiglio Nazionale delle Ricerche, Universit\u00e1 La Sapienza00185 Roma, Italy","institution_ids":["https://openalex.org/I4210110528"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043140265","display_name":"Francesco Bossa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110528","display_name":"Institute of Molecular Biology and Pathology","ror":"https://ror.org/01nyatq71","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210110528","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Bossa","raw_affiliation_strings":["Dipartmento di Scienze Biochimiche and Centro di Biologia Molecolare del Consiglio Nazionale delle Ricerche, Universit\u00e1 La Sapienza00185 Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartmento di Scienze Biochimiche and Centro di Biologia Molecolare del Consiglio Nazionale delle Ricerche, Universit\u00e1 La Sapienza00185 Roma, Italy","institution_ids":["https://openalex.org/I4210110528"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08443626,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"3","issue":"4","first_page":"325","last_page":"331"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9193999767303467,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7887675762176514},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5837392210960388},{"id":"https://openalex.org/keywords/proteus","display_name":"Proteus","score":0.4371560513973236},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3955080509185791},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3215892016887665},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26901382207870483},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11709380149841309},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08455875515937805}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7887675762176514},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5837392210960388},{"id":"https://openalex.org/C2779464495","wikidata":"https://www.wikidata.org/wiki/Q132229","display_name":"Proteus","level":4,"score":0.4371560513973236},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3955080509185791},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3215892016887665},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26901382207870483},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11709380149841309},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08455875515937805},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002627","descriptor_name":"Chemistry, Physical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002627","descriptor_name":"Chemistry, Physical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002627","descriptor_name":"Chemistry, Physical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/3.4.325","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/3.4.325","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:3453242","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/3453242","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer applications in the biosciences : CABIOS","raw_type":null},{"id":"pmh:oai:iris.uniroma1.it:11573/384130","is_oa":false,"landing_page_url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-0023450018&partnerID=65&md5=d8d0182b30726f83655283f102fca865","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W1511772879","https://openalex.org/W4379115841","https://openalex.org/W2419441924","https://openalex.org/W4200340037","https://openalex.org/W608917066","https://openalex.org/W2369533376"],"abstract_inverted_index":{"We":[0],"have":[1],"implemented":[2],"several":[3],"algorithms,":[4],"developed":[5],"by":[6],"various":[7],"authors":[8],"for":[9,36,43,60,68,88],"predicting":[10,37],"structural":[11,125],"features":[12,126],"of":[13,51,55,76,80,104,114,124,132],"proteins":[14,133],"from":[15],"their":[16],"primary":[17],"structure,":[18],"on":[19,90],"an":[20,99],"Apple":[21],"IIe":[22],"and":[23,66],"collected":[24],"them":[25],"in":[26,108],"a":[27,85,91,115],"suite,":[28],"named":[29],"PROTEUS.":[30],"This":[31],"suite":[32,83],"incorporates:":[33],"(i)":[34],"methods":[35,106],"secondary":[38],"structure;":[39],"(ii)":[40],"the":[41,45,58,62,70,93,105,112,122,130],"algorithm":[42],"computing":[44],"hydropathy":[46],"profile":[47],"using":[48,73],"one":[49,74],"out":[50,75],"five":[52],"available":[53,78],"sets":[54,79],"parameters;":[56],"(iii)":[57],"algorithms":[59],"calculating":[61],"hydrophobic":[63],"moment":[64],"plot;":[65],"(iv)":[67],"performing":[69],"amphipathic":[71],"analysis":[72],"four":[77],"parameters.":[81],"The":[82,119],"has":[84],"utility":[86],"program":[87],"storing":[89],"disk":[92],"sequence":[94],"to":[95,110,129],"be":[96],"analysed.":[97],"As":[98],"example,":[100],"we":[101],"applied":[102],"some":[103],"included":[107],"PROTEUS":[109],"predict":[111],"structure":[113],"mitochondrial":[116],"leader":[117],"peptide.":[118],"results":[120],"suggest":[121],"occurrence":[123],"possibly":[127],"related":[128],"import":[131],"into":[134],"mitochondria.":[135]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}
