{"id":"https://openalex.org/W1993212441","doi":"https://doi.org/10.1093/bioinformatics/18.suppl_1.s199","title":"Assigning probes into a small number of pools separable by electrophoresis","display_name":"Assigning probes into a small number of pools separable by electrophoresis","publication_year":2002,"publication_date":"2002-07-01","ids":{"openalex":"https://openalex.org/W1993212441","doi":"https://doi.org/10.1093/bioinformatics/18.suppl_1.s199","mag":"1993212441","pmid":"https://pubmed.ncbi.nlm.nih.gov/12169548"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/18.suppl_1.s199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/18.suppl_1.s199","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/18/suppl_1/S199/630394/18S199.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/18/suppl_1/S199/630394/18S199.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003007386","display_name":"Teemu Kivioja","orcid":"https://orcid.org/0000-0002-7732-2177"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Teemu Kivioja","raw_affiliation_strings":["Department of Computer Science, University of Helsinki, Teollisuuskatu 23, Helsinki, PO Box 26, FIN-00014, Finland. Teemu.Kivioja@cs.Helsinki.FI","Department of Computer Science, University of Helsinki, Teollisuuskatu 23, Helsinki, PO Box 26, FIN-00014, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Teollisuuskatu 23, Helsinki, PO Box 26, FIN-00014, Finland. Teemu.Kivioja@cs.Helsinki.FI","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Department of Computer Science, University of Helsinki, Teollisuuskatu 23, Helsinki, PO Box 26, FIN-00014, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036297981","display_name":"Mikko Arvas","orcid":"https://orcid.org/0000-0002-6902-8488"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mikko Arvas","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059546264","display_name":"Kari Kataja","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kari Kataja","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043243404","display_name":"Merja Penttil\u00e4","orcid":"https://orcid.org/0000-0002-6929-1032"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Merja Penttil\u00e4","raw_affiliation_strings":["BA34 Industrial biotechnology and food solutions"],"affiliations":[{"raw_affiliation_string":"BA34 Industrial biotechnology and food solutions","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062780100","display_name":"Hans S\u00f6derlund","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hans S\u00f6derlund","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5058284151","display_name":"Esko Ukkonen","orcid":"https://orcid.org/0000-0002-5978-1505"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Esko Ukkonen","raw_affiliation_strings":["#N##TAB##TAB##TAB##TAB# University of Helsinki#N##TAB##TAB##TAB#"],"affiliations":[{"raw_affiliation_string":"#N##TAB##TAB##TAB##TAB# University of Helsinki#N##TAB##TAB##TAB#","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003007386"],"corresponding_institution_ids":["https://openalex.org/I133731052"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7786,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.69027441,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"18","issue":"suppl_1","first_page":"S199","last_page":"S206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5140936970710754},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48598822951316833},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4780571758747101},{"id":"https://openalex.org/keywords/separable-space","display_name":"Separable space","score":0.46924450993537903},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.44793450832366943},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38220924139022827},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.306180477142334},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2721747159957886},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17467626929283142},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1735040843486786}],"concepts":[{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5140936970710754},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48598822951316833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4780571758747101},{"id":"https://openalex.org/C70710897","wikidata":"https://www.wikidata.org/wiki/Q680081","display_name":"Separable space","level":2,"score":0.46924450993537903},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44793450832366943},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38220924139022827},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.306180477142334},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2721747159957886},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17467626929283142},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1735040843486786},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004586","descriptor_name":"Electrophoresis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004586","descriptor_name":"Electrophoresis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004586","descriptor_name":"Electrophoresis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015342","descriptor_name":"DNA Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/18.suppl_1.s199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/18.suppl_1.s199","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/18/suppl_1/S199/630394/18S199.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12169548","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12169548","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/18.suppl_1.s199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/18.suppl_1.s199","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/18/suppl_1/S199/630394/18S199.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1993212441.pdf","grobid_xml":"https://content.openalex.org/works/W1993212441.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1445129317","https://openalex.org/W1578276197","https://openalex.org/W1597644352","https://openalex.org/W1970156673","https://openalex.org/W1987571835","https://openalex.org/W2005189491","https://openalex.org/W2008816808","https://openalex.org/W2097383747","https://openalex.org/W2100751585","https://openalex.org/W2118782342","https://openalex.org/W2124281279","https://openalex.org/W2130494035","https://openalex.org/W2143474538","https://openalex.org/W2152216760","https://openalex.org/W2158714788","https://openalex.org/W2752885492"],"related_works":["https://openalex.org/W2030640333","https://openalex.org/W1872127137","https://openalex.org/W3164573509","https://openalex.org/W3128881704","https://openalex.org/W2521866209","https://openalex.org/W3023271652","https://openalex.org/W2101115907","https://openalex.org/W119390381","https://openalex.org/W1976142521","https://openalex.org/W4383032973"],"abstract_inverted_index":{"We":[0,74],"show":[1],"how":[2],"to":[3,51],"computationally":[4],"find":[5],"the":[6,33,53,58,70,76,79,85,112],"probes":[7,71,83],"and":[8,29,31,88,99],"assign":[9],"them":[10,90],"into":[11,72,91,102],"pools":[12,45,103],"for":[13,27,68,84,106],"a":[14,23,41,64],"whole":[15],"genome":[16,87],"such":[17],"that":[18],"(i)":[19],"each":[20],"gene":[21],"has":[22],"specific":[24],"probe":[25,97],"suitable":[26],"amplification":[28],"hybridization,":[30],"(ii)":[32],"expression":[34],"level":[35],"measurement":[36],"can":[37],"be":[38],"done":[39],"in":[40,49],"minimal":[42],"number":[43],"of":[44,57,78],"separable":[46],"by":[47,81],"electrophoresis":[48],"order":[50],"minimize":[52],"total":[54],"experiment":[55],"cost":[56],"measurement.":[59],"Our":[60],"main":[61],"result":[62],"is":[63],"polynomial-time":[65],"approximation":[66],"algorithm":[67],"assigning":[69,89],"pools.":[73,95],"demonstrate":[75],"feasibility":[77],"procedure":[80],"selecting":[82],"yeast":[86],"less":[92],"than":[93],"100":[94],"The":[96],"sequences":[98],"their":[100],"assignment":[101],"are":[104],"available":[105],"academic":[107],"research":[108],"on":[109],"request":[110],"from":[111],"authors.":[113]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
