{"id":"https://openalex.org/W2138334294","doi":"https://doi.org/10.1093/bioinformatics/18.11.1544","title":"Poxvirus Orthologous Clusters (POCs)","display_name":"Poxvirus Orthologous Clusters (POCs)","publication_year":2002,"publication_date":"2002-11-01","ids":{"openalex":"https://openalex.org/W2138334294","doi":"https://doi.org/10.1093/bioinformatics/18.11.1544","mag":"2138334294","pmid":"https://pubmed.ncbi.nlm.nih.gov/12424130"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/18.11.1544","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/18.11.1544","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025292350","display_name":"Angelika Ehlers","orcid":null},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Angelika Ehlers","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085958503","display_name":"John D. Osborne","orcid":"https://orcid.org/0000-0002-0851-1150"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"John Osborne","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068315210","display_name":"Stephanie Slack","orcid":null},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Stephanie Slack","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053962751","display_name":"Rachel L. Roper","orcid":"https://orcid.org/0000-0001-6971-7745"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Rachel L. Roper","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033180528","display_name":"Chris Upton","orcid":"https://orcid.org/0000-0002-9019-8967"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chris Upton","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC~V8W~3P6, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5025292350"],"corresponding_institution_ids":["https://openalex.org/I212119943"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6683,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.83756443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"18","issue":"11","first_page":"1544","last_page":"1545"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11767","display_name":"Poxvirus research and outbreaks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6497008204460144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5362256169319153},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5128214955329895},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48542341589927673},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.47376635670661926},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.422330379486084},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4112875163555145},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3563775420188904},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15026512742042542},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07374599575996399}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6497008204460144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5362256169319153},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5128214955329895},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48542341589927673},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.47376635670661926},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.422330379486084},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4112875163555145},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3563775420188904},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15026512742042542},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07374599575996399},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011212","descriptor_name":"Poxviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011212","descriptor_name":"Poxviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011212","descriptor_name":"Poxviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011212","descriptor_name":"Poxviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011212","descriptor_name":"Poxviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011212","descriptor_name":"Poxviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019212","descriptor_name":"Multimedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019212","descriptor_name":"Multimedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019212","descriptor_name":"Multimedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/18.11.1544","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/18.11.1544","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12424130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12424130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2100291962","https://openalex.org/W2106880273","https://openalex.org/W2158714788","https://openalex.org/W2165567081"],"related_works":["https://openalex.org/W2749690376","https://openalex.org/W4281673905","https://openalex.org/W2786317006","https://openalex.org/W4367724653","https://openalex.org/W2788563018","https://openalex.org/W3042948800","https://openalex.org/W2997587123","https://openalex.org/W3206385231","https://openalex.org/W2987420353","https://openalex.org/W1491897707"],"abstract_inverted_index":{"Poxvirus":[0],"Orthologous":[1],"Clusters":[2],"(POCs)":[3],"is":[4],"a":[5,33,39,64],"JAVA":[6],"client-server":[7],"application":[8],"which":[9],"accesses":[10],"an":[11],"updated":[12],"database":[13,35],"containing":[14],"all":[15],"complete":[16],"poxvirus":[17],"genomes;":[18],"it":[19],"automatically":[20],"groups":[21,49],"orthologous":[22],"genes":[23],"into":[24],"families":[25,59],"based":[26],"on":[27],"BLASTP":[28],"scores":[29],"for":[30,60],"assessment":[31],"by":[32,63],"human":[34],"curator.":[36],"POCs":[37],"has":[38],"user-friendly":[40],"interface":[41],"permitting":[42],"complex":[43],"SQL":[44],"queries":[45],"to":[46,83],"retrieve":[47],"interesting":[48],"of":[50,66],"DNA":[51],"and":[52,80],"protein":[53],"sequences":[54],"as":[55,57],"well":[56],"gene":[58],"subsequent":[61],"interrogation":[62],"variety":[65],"integrated":[67],"tools:":[68],"BLASTP,":[69],"BLASTX,":[70],"TBLASTN,":[71],"Jalview":[72],"(multiple":[73],"alignment),":[74,79],"Dotlet":[75],"(Dotplot),":[76],"Laj":[77],"(local":[78],"NAP":[81],"(nucleotide":[82],"amino":[84],"acid":[85],"alignment).":[86]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}