{"id":"https://openalex.org/W2153485297","doi":"https://doi.org/10.1093/bioinformatics/15.5.382","title":"PIR-ALN: a database of protein sequence alignments.","display_name":"PIR-ALN: a database of protein sequence alignments.","publication_year":1999,"publication_date":"1999-05-01","ids":{"openalex":"https://openalex.org/W2153485297","doi":"https://doi.org/10.1093/bioinformatics/15.5.382","mag":"2153485297","pmid":"https://pubmed.ncbi.nlm.nih.gov/10366659"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/15.5.382","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/15.5.382","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011837126","display_name":"G. Y. Srinivasarao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112961","display_name":"Biomedical Research Foundation","ror":"https://ror.org/022jjvb64","country_code":"US","type":"other","lineage":["https://openalex.org/I4210112961"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G Y Srinivasarao","raw_affiliation_strings":["Protein Information Resource (PIR), National Biomedical Research Foundation, 3900 Reservoir Road NW, Washington, DC 20007, USA. Geetha@nbrf.georgetown.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Protein Information Resource (PIR), National Biomedical Research Foundation, 3900 Reservoir Road NW, Washington, DC 20007, USA. Geetha@nbrf.georgetown.edu","institution_ids":["https://openalex.org/I4210112961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059307693","display_name":"Li\u2010Tzu Yeh","orcid":"https://orcid.org/0000-0003-2351-8040"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L S Yeh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067469692","display_name":"C. R. Marzec","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C R Marzec","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051232919","display_name":"B.C. ORCUTT","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"B C Orcutt","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5059783115","display_name":"Winona C. Barker","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W C Barker","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8798,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.85882136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"15","issue":"5","first_page":"382","last_page":"390"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.13590000569820404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.13590000569820404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.12349999696016312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.11259999871253967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6782463788986206},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.6127944588661194},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6029644012451172},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.484565407037735},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4769417345523834},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4249069094657898},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3842228353023529},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3479102551937103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22341561317443848},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1836119294166565},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0927591621875763}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6782463788986206},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.6127944588661194},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6029644012451172},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.484565407037735},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4769417345523834},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4249069094657898},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3842228353023529},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3479102551937103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22341561317443848},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1836119294166565},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0927591621875763}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/15.5.382","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/15.5.382","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:10366659","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10366659","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.47999998927116394,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G5683159420","display_name":null,"funder_award_id":"LM05798","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2037896692","https://openalex.org/W2136066520","https://openalex.org/W1557336618","https://openalex.org/W2036521446","https://openalex.org/W2053028024","https://openalex.org/W2926533301","https://openalex.org/W2354598492","https://openalex.org/W2119986142","https://openalex.org/W2011602722","https://openalex.org/W2103210188"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,153,190,203],"Protein":[2,25],"Information":[3],"Resource":[4],"(PIR)":[5],"maintains":[6],"a":[7,40,71,175],"database":[8,69],"of":[9,39,66,73,130],"annotated":[10],"and":[11,30,35,44,55,81,93,114,150,163,187,192],"curated":[12],"alignments":[13,108,136],"in":[14,22,48,51,56,146],"order":[15],"to":[16,28,45,91,112,117,125,141,161],"visually":[17],"represent":[18],"interrelationships":[19],"among":[20,37],"sequences":[21],"the":[23,67,127,165,182,199,214],"PIR-International":[24],"Sequence":[26],"Database,":[27],"spread":[29,115],"standardize":[31,113],"protein":[32],"names,":[33],"features":[34],"keywords":[36],"members":[38,119],"family":[41,80],"or":[42,101],"superfamily,":[43,78],"aid":[46],"us":[47],"classifying":[49],"sequences,":[50],"identifying":[52],"conserved":[53],"regions,":[54],"defining":[57],"new":[58],"homology":[59,83],"domains.":[60],"RESULTS:":[61],"Release":[62],"22.0,":[63],"(December":[64],"1998),":[65],"PIR-ALN":[68,133,166,169],"contains":[70],"total":[72],"3806":[74],"alignments,":[75],"including":[76],"1303":[77],"2131":[79],"372":[82],"domain":[84],"alignments.":[85,167],"This":[86],"is":[87,170],"an":[88],"appropriate":[89],"dataset":[90],"develop":[92,142],"extract":[94],"patterns,":[95],"test":[96],"profiles,":[97],"train":[98],"neural":[99],"networks":[100],"build":[102],"Hidden":[103],"Markov":[104],"Models":[105],"(HMMs).":[106],"These":[107],"can":[109,138,158,195,206],"be":[110,139,159,196,208],"used":[111,140,160],"annotation":[116],"newer":[118],"by":[120,210],"homology,":[121],"as":[122,124,174],"well":[123],"understand":[126],"modular":[128],"architecture":[129],"multidomain":[131],"proteins.":[132],"includes":[134],"529":[135],"that":[137],"patterns":[143],"not":[144],"represented":[145],"PROSITE,":[147],"Blocks,":[148],"PRINTS":[149],"Pfam":[151],"databases.":[152],"ATLAS":[154],"information":[155],"retrieval":[156],"system":[157],"browse":[162],"query":[164],"AVAILABILITY:":[168],"currently":[171],"being":[172],"distributed":[173],"single":[176],"ASCII":[177],"text":[178],"file":[179],"along":[180],"with":[181],"title,":[183],"member,":[184],"species,":[185],"superfamily":[186],"keyword":[188],"indexes.":[189],"quarterly":[191,204],"weekly":[193],"updates":[194,205],"accessed":[197],"via":[198],"WWW":[200],"at":[201,218],"pir.georgetown.edu.":[202],"also":[207],"obtained":[209],"anonymous":[211],"FTP":[212,216],"from":[213],"PIR":[215],"site":[217],"NBRF.Georgetown.edu,":[219],"directory":[220],"[ANONYMOUS.PIR.ALIGNMENT].":[221]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
