{"id":"https://openalex.org/W3000469142","doi":"https://doi.org/10.1093/bib/bbz171","title":"Deep learning for drug response prediction in cancer","display_name":"Deep learning for drug response prediction in cancer","publication_year":2019,"publication_date":"2019-12-17","ids":{"openalex":"https://openalex.org/W3000469142","doi":"https://doi.org/10.1093/bib/bbz171","mag":"3000469142","pmid":"https://pubmed.ncbi.nlm.nih.gov/31950132"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz171","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz171","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012833188","display_name":"Delora Baptista","orcid":"https://orcid.org/0000-0002-9258-5303"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Delora Baptista","raw_affiliation_strings":["Biomedical Engineering at the University of Minho"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Engineering at the University of Minho","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089291118","display_name":"Pedro G. Ferreira","orcid":"https://orcid.org/0000-0003-3838-8664"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro G Ferreira","raw_affiliation_strings":["University of Porto"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Porto","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524717","display_name":"Miguel Rocha","orcid":"https://orcid.org/0000-0001-8439-8172"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Miguel Rocha","raw_affiliation_strings":["Department of Informatics and a Senior Researcher of the Centre of Biological Engineering at the University of Minho"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics and a Senior Researcher of the Centre of Biological Engineering at the University of Minho","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012833188"],"corresponding_institution_ids":["https://openalex.org/I99682543"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":15.3623,"has_fulltext":false,"cited_by_count":242,"citation_normalized_percentile":{"value":0.99296218,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"360","last_page":"379"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7001811861991882},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6700147986412048},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.6387952566146851},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6060659289360046},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5088337063789368},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5001060962677002},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4952065050601959},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"Cancer cell lines","score":0.48087695240974426},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.45916470885276794},{"id":"https://openalex.org/keywords/cancer-drugs","display_name":"Cancer drugs","score":0.45406386256217957},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4402826428413391},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.43057823181152344},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3762058615684509},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23450660705566406},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.18341001868247986},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16790679097175598},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.101721853017807},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.09544408321380615}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7001811861991882},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6700147986412048},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.6387952566146851},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6060659289360046},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5088337063789368},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5001060962677002},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4952065050601959},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.48087695240974426},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.45916470885276794},{"id":"https://openalex.org/C3020340455","wikidata":"https://www.wikidata.org/wiki/Q974135","display_name":"Cancer drugs","level":3,"score":0.45406386256217957},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4402826428413391},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.43057823181152344},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3762058615684509},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23450660705566406},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.18341001868247986},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16790679097175598},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.101721853017807},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.09544408321380615},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000071184","descriptor_name":"Pharmacogenomic Variants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071184","descriptor_name":"Pharmacogenomic Variants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071184","descriptor_name":"Pharmacogenomic Variants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbz171","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz171","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31950132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31950132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:repositorium.sdum.uminho.pt:1822/73086","is_oa":false,"landing_page_url":"http://hdl.handle.net/1822/73086","pdf_url":null,"source":{"id":"https://openalex.org/S4306400354","display_name":"Reposit\u00f3riUM (Universidade do Minho)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99682543","host_organization_name":"University of Minho","host_organization_lineage":["https://openalex.org/I99682543"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"},{"id":"pmh:oai:repositorium.uminho.pt:1822/73086","is_oa":false,"landing_page_url":"https://hdl.handle.net/1822/73086","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G1254683822","display_name":null,"funder_award_id":"UID/BIO/04469/2019","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2960934612","display_name":null,"funder_award_id":"SFRH/BD/130913/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":157,"referenced_works":["https://openalex.org/W1944672","https://openalex.org/W1554944419","https://openalex.org/W1741548448","https://openalex.org/W1813659000","https://openalex.org/W1959608418","https://openalex.org/W1992014004","https://openalex.org/W1999390452","https://openalex.org/W1999798000","https://openalex.org/W2006199723","https://openalex.org/W2011474181","https://openalex.org/W2016723506","https://openalex.org/W2017715710","https://openalex.org/W2036291018","https://openalex.org/W2042619042","https://openalex.org/W2043398720","https://openalex.org/W2060737851","https://openalex.org/W2063280109","https://openalex.org/W2072128103","https://openalex.org/W2087312216","https://openalex.org/W2095705004","https://openalex.org/W2096541451","https://openalex.org/W2098156682","https://openalex.org/W2100495367","https://openalex.org/W2104709519","https://openalex.org/W2108068107","https://openalex.org/W2108933868","https://openalex.org/W2110071511","https://openalex.org/W2118527670","https://openalex.org/W2121604817","https://openalex.org/W2125789330","https://openalex.org/W2126821513","https://openalex.org/W2129860849","https://openalex.org/W2133564696","https://openalex.org/W2136922672","https://openalex.org/W2139132031","https://openalex.org/W2141504882","https://openalex.org/W2145047343","https://openalex.org/W2152883907","https://openalex.org/W2157852151","https://openalex.org/W2159457208","https://openalex.org/W2163614729","https://openalex.org/W2163922914","https://openalex.org/W2168102484","https://openalex.org/W2175970000","https://openalex.org/W2177317049","https://openalex.org/W2189911347","https://openalex.org/W2195098119","https://openalex.org/W2229940530","https://openalex.org/W2271840356","https://openalex.org/W2290847742","https://openalex.org/W2294516783","https://openalex.org/W2299417213","https://openalex.org/W2306570595","https://openalex.org/W2318806991","https://openalex.org/W2320205132","https://openalex.org/W2329253854","https://openalex.org/W2397757171","https://openalex.org/W2407075689","https://openalex.org/W2461427403","https://openalex.org/W2520858206","https://openalex.org/W2521492299","https://openalex.org/W2540093921","https://openalex.org/W2557283755","https://openalex.org/W2557547609","https://openalex.org/W2559515797","https://openalex.org/W2567080747","https://openalex.org/W2571957366","https://openalex.org/W2582187633","https://openalex.org/W2592052522","https://openalex.org/W2594183968","https://openalex.org/W2604296437","https://openalex.org/W2608863179","https://openalex.org/W2612467560","https://openalex.org/W2731161895","https://openalex.org/W2740946158","https://openalex.org/W2741508285","https://openalex.org/W2751974426","https://openalex.org/W2755779374","https://openalex.org/W2766708596","https://openalex.org/W2766761250","https://openalex.org/W2767593474","https://openalex.org/W2767891136","https://openalex.org/W2768921712","https://openalex.org/W2768977980","https://openalex.org/W2771328536","https://openalex.org/W2775061087","https://openalex.org/W2777097994","https://openalex.org/W2787055278","https://openalex.org/W2787894218","https://openalex.org/W2795257806","https://openalex.org/W2801991413","https://openalex.org/W2805404971","https://openalex.org/W2806547269","https://openalex.org/W2807463161","https://openalex.org/W2809671526","https://openalex.org/W2837999301","https://openalex.org/W2884635850","https://openalex.org/W2885305010","https://openalex.org/W2898789672","https://openalex.org/W2901246787","https://openalex.org/W2906092989","https://openalex.org/W2908883246","https://openalex.org/W2919115771","https://openalex.org/W2921591500","https://openalex.org/W2943389614","https://openalex.org/W2944723276","https://openalex.org/W2944727022","https://openalex.org/W2945976633","https://openalex.org/W2946099214","https://openalex.org/W2946834067","https://openalex.org/W2951449549","https://openalex.org/W2951934944","https://openalex.org/W2953253500","https://openalex.org/W2953265656","https://openalex.org/W2955502047","https://openalex.org/W2962924847","https://openalex.org/W2963046727","https://openalex.org/W2963809228","https://openalex.org/W2963847595","https://openalex.org/W2963850512","https://openalex.org/W2964113829","https://openalex.org/W2965750004","https://openalex.org/W2982583112","https://openalex.org/W2999905431","https://openalex.org/W3100157108","https://openalex.org/W3101319109","https://openalex.org/W3108460763","https://openalex.org/W3211275679","https://openalex.org/W4231109964","https://openalex.org/W4234509242","https://openalex.org/W4295312788","https://openalex.org/W6638304892","https://openalex.org/W6640963894","https://openalex.org/W6650107517","https://openalex.org/W6674330103","https://openalex.org/W6676297131","https://openalex.org/W6679434410","https://openalex.org/W6683915439","https://openalex.org/W6685350579","https://openalex.org/W6694517276","https://openalex.org/W6722226382","https://openalex.org/W6726258750","https://openalex.org/W6731476941","https://openalex.org/W6734194636","https://openalex.org/W6736161267","https://openalex.org/W6736518430","https://openalex.org/W6737947904","https://openalex.org/W6738199216","https://openalex.org/W6743507629","https://openalex.org/W6747097715","https://openalex.org/W6752134831","https://openalex.org/W6756216553","https://openalex.org/W6762564781","https://openalex.org/W6763138596","https://openalex.org/W6764190685","https://openalex.org/W6766152879","https://openalex.org/W6766978945"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2480711475","https://openalex.org/W4239572564","https://openalex.org/W3117207241","https://openalex.org/W4283076622","https://openalex.org/W2318806991","https://openalex.org/W2197241765","https://openalex.org/W2004908052","https://openalex.org/W2292969731"],"abstract_inverted_index":{"Predicting":[0],"the":[1,36,88,103,129,146,179,217],"sensitivity":[2],"of":[3,12,38,58,69,76,91,105,131,176,182,196,219],"tumors":[4],"to":[5,28,34,44,54,107,139,162,207],"specific":[6],"anti-cancer":[7],"treatments":[8],"is":[9,137],"a":[10,55,67,173,194,224],"challenge":[11],"paramount":[13],"importance":[14],"for":[15,87,133,229],"precision":[16],"medicine.":[17],"Machine":[18],"learning(ML)":[19],"algorithms":[20,60],"can":[21,204],"be":[22,205],"trained":[23],"on":[24,96,226],"high-throughput":[25],"screening":[26,200],"data":[27,201],"develop":[29,208],"models":[30,77],"that":[31,61,81,120,157,184,203],"are":[32],"able":[33],"predict":[35,163],"response":[37,94,109,135,165,210],"cancer":[39,167],"cell":[40,168],"lines":[41],"and":[42,99,128,178,222],"patients":[43],"novel":[45],"drugs":[46],"or":[47],"drug":[48,72,93,108,134,164,199,209],"combinations.":[49],"Deep":[50],"learning":[51],"(DL)":[52],"refers":[53],"distinct":[56],"class":[57],"ML":[59],"have":[62,78,121,124,158,185],"achieved":[63],"top-level":[64],"performance":[65],"in":[66,145,166,188],"variety":[68],"fields,":[70],"including":[71],"discovery.":[73],"These":[74],"types":[75,181],"unique":[79],"characteristics":[80],"may":[82],"make":[83],"them":[84],"more":[85],"suitable":[86],"complex":[89],"task":[90],"modeling":[92],"based":[95],"both":[97],"biological":[98],"chemical":[100],"data,":[101],"but":[102],"application":[104],"DL":[106,132,160,177],"prediction":[110,136,211],"has":[111],"been":[112,122,186],"unexplored":[113],"until":[114],"very":[115],"recently.":[116],"The":[117],"few":[118],"studies":[119,156],"published":[123,155],"shown":[125],"promising":[126],"results,":[127],"use":[130],"beginning":[138],"attract":[140],"greater":[141],"interest":[142],"from":[143],"researchers":[144],"field.":[147],"In":[148],"this":[149],"article,":[150],"we":[151,192,214],"critically":[152],"review":[153],"recently":[154],"employed":[159],"methods":[161],"lines.":[169],"We":[170],"also":[171,215],"provide":[172,223],"brief":[174],"description":[175],"main":[180],"architectures":[183],"used":[187,206],"these":[189,220],"studies.":[190],"Additionally,":[191],"present":[193],"selection":[195],"publicly":[197],"available":[198],"resources":[202],"models.":[212],"Finally,":[213],"address":[216],"limitations":[218],"approaches":[221],"discussion":[225],"possible":[227],"paths":[228],"further":[230],"improvement.":[231],"Contact:":[232],"mrocha@di.uminho.pt.":[233]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":48},{"year":2024,"cited_by_count":56},{"year":2023,"cited_by_count":53},{"year":2022,"cited_by_count":34},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":11}],"updated_date":"2026-05-14T08:36:36.166977","created_date":"2025-10-10T00:00:00"}
