{"id":"https://openalex.org/W2995649573","doi":"https://doi.org/10.1093/bib/bbz155","title":"Current challenges and best-practice protocols for microbiome analysis","display_name":"Current challenges and best-practice protocols for microbiome analysis","publication_year":2019,"publication_date":"2019-11-07","ids":{"openalex":"https://openalex.org/W2995649573","doi":"https://doi.org/10.1093/bib/bbz155","mag":"2995649573","pmid":"https://pubmed.ncbi.nlm.nih.gov/31848574"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz155","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz155","pdf_url":"https://academic.oup.com/bib/article-pdf/22/1/178/35934895/bbz155.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/22/1/178/35934895/bbz155.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063550029","display_name":"Richa Bharti","orcid":"https://orcid.org/0000-0001-8271-1268"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Richa Bharti","raw_affiliation_strings":["Weihenstephan-Triesdorf University of Applied Sciences and Technical University of Munich, TUM Campus Straubing for Biotechnology and Sustainability, Straubing, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weihenstephan-Triesdorf University of Applied Sciences and Technical University of Munich, TUM Campus Straubing for Biotechnology and Sustainability, Straubing, Germany","institution_ids":["https://openalex.org/I309496635","https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009539507","display_name":"Dominik G. Grimm","orcid":"https://orcid.org/0000-0003-2085-4591"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dominik G Grimm","raw_affiliation_strings":["Weihenstephan-Triesdorf University of Applied Sciences and Technical University of Munich, TUM Campus Straubing for Biotechnology and Sustainability, Straubing, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2085-4591","affiliations":[{"raw_affiliation_string":"Weihenstephan-Triesdorf University of Applied Sciences and Technical University of Munich, TUM Campus Straubing for Biotechnology and Sustainability, Straubing, Germany","institution_ids":["https://openalex.org/I309496635","https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5009539507"],"corresponding_institution_ids":["https://openalex.org/I309496635","https://openalex.org/I62916508"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":14.5823,"has_fulltext":true,"cited_by_count":579,"citation_normalized_percentile":{"value":0.99425044,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"178","last_page":"193"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8480144739151001},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7874710559844971},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7349167466163635},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.6520466804504395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6132546663284302},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5284478664398193},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5167840719223022},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5079248547554016},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4907918870449066},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4841761887073517},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.46224355697631836},{"id":"https://openalex.org/keywords/best-practice","display_name":"Best practice","score":0.42817968130111694},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3277040421962738},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31222522258758545},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2648051977157593},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15089541673660278},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11449480056762695},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10461792349815369}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8480144739151001},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7874710559844971},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7349167466163635},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.6520466804504395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6132546663284302},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5284478664398193},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5167840719223022},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5079248547554016},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4907918870449066},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4841761887073517},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.46224355697631836},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.42817968130111694},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3277040421962738},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31222522258758545},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2648051977157593},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15089541673660278},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11449480056762695},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10461792349815369},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017410","descriptor_name":"Practice Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017410","descriptor_name":"Practice Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017410","descriptor_name":"Practice Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017410","descriptor_name":"Practice Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbz155","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz155","pdf_url":"https://academic.oup.com/bib/article-pdf/22/1/178/35934895/bbz155.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31848574","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31848574","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:6746371","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7820839","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1534196","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1534196","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1624208","is_oa":true,"landing_page_url":"https://mediatum.ub.tum.de/1624208","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7820839","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7820839","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbz155","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz155","pdf_url":"https://academic.oup.com/bib/article-pdf/22/1/178/35934895/bbz155.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6299999952316284,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2995649573.pdf","grobid_xml":"https://content.openalex.org/works/W2995649573.grobid-xml"},"referenced_works_count":187,"referenced_works":["https://openalex.org/W95530519","https://openalex.org/W195402836","https://openalex.org/W1519765314","https://openalex.org/W1584790813","https://openalex.org/W1716352502","https://openalex.org/W1846216853","https://openalex.org/W1945370545","https://openalex.org/W1964282650","https://openalex.org/W1977928166","https://openalex.org/W1982579644","https://openalex.org/W1983047294","https://openalex.org/W1983403167","https://openalex.org/W1985197139","https://openalex.org/W2000040814","https://openalex.org/W2003347102","https://openalex.org/W2006211612","https://openalex.org/W2010002522","https://openalex.org/W2022316530","https://openalex.org/W2036647435","https://openalex.org/W2041391522","https://openalex.org/W2045204781","https://openalex.org/W2045449780","https://openalex.org/W2046137036","https://openalex.org/W2046498307","https://openalex.org/W2047242127","https://openalex.org/W2049933107","https://openalex.org/W2050169817","https://openalex.org/W2052201484","https://openalex.org/W2052554412","https://openalex.org/W2056279562","https://openalex.org/W2060993546","https://openalex.org/W2067964678","https://openalex.org/W2071841602","https://openalex.org/W2077631777","https://openalex.org/W2078794349","https://openalex.org/W2079520182","https://openalex.org/W2082203850","https://openalex.org/W2089310071","https://openalex.org/W2090787106","https://openalex.org/W2096093282","https://openalex.org/W2096290681","https://openalex.org/W2100561213","https://openalex.org/W2102424043","https://openalex.org/W2102471114","https://openalex.org/W2102652793","https://openalex.org/W2103441770","https://openalex.org/W2103901746","https://openalex.org/W2105199251","https://openalex.org/W2106090237","https://openalex.org/W2108718991","https://openalex.org/W2109848222","https://openalex.org/W2110082875","https://openalex.org/W2111373249","https://openalex.org/W2112364185","https://openalex.org/W2113114502","https://openalex.org/W2113679889","https://openalex.org/W2115026474","https://openalex.org/W2117688129","https://openalex.org/W2120267228","https://openalex.org/W2120330409","https://openalex.org/W2121291798","https://openalex.org/W2122494133","https://openalex.org/W2122559203","https://openalex.org/W2124704611","https://openalex.org/W2125079066","https://openalex.org/W2125806930","https://openalex.org/W2125826054","https://openalex.org/W2129933858","https://openalex.org/W2131026689","https://openalex.org/W2131186249","https://openalex.org/W2131271579","https://openalex.org/W2132341951","https://openalex.org/W2133722656","https://openalex.org/W2133790733","https://openalex.org/W2138122982","https://openalex.org/W2140437680","https://openalex.org/W2141920662","https://openalex.org/W2142802314","https://openalex.org/W2143485490","https://openalex.org/W2147526198","https://openalex.org/W2147783737","https://openalex.org/W2149132056","https://openalex.org/W2151350595","https://openalex.org/W2151956863","https://openalex.org/W2152180708","https://openalex.org/W2154003902","https://openalex.org/W2154401636","https://openalex.org/W2158700061","https://openalex.org/W2159008215","https://openalex.org/W2159527861","https://openalex.org/W2159591897","https://openalex.org/W2159954944","https://openalex.org/W2160414677","https://openalex.org/W2161062388","https://openalex.org/W2162758337","https://openalex.org/W2169230701","https://openalex.org/W2170025869","https://openalex.org/W2170486072","https://openalex.org/W2170551349","https://openalex.org/W2173732482","https://openalex.org/W2175526948","https://openalex.org/W2191298871","https://openalex.org/W2229420368","https://openalex.org/W2271006909","https://openalex.org/W2271910498","https://openalex.org/W2289678372","https://openalex.org/W2292928167","https://openalex.org/W2302648836","https://openalex.org/W2305300412","https://openalex.org/W2326559226","https://openalex.org/W2328142025","https://openalex.org/W2346423776","https://openalex.org/W2401404581","https://openalex.org/W2403288892","https://openalex.org/W2409427249","https://openalex.org/W2434466422","https://openalex.org/W2434837336","https://openalex.org/W2465681871","https://openalex.org/W2486179031","https://openalex.org/W2530896378","https://openalex.org/W2538509698","https://openalex.org/W2550586225","https://openalex.org/W2550586733","https://openalex.org/W2559418591","https://openalex.org/W2559838906","https://openalex.org/W2572263783","https://openalex.org/W2575475854","https://openalex.org/W2578149194","https://openalex.org/W2587306428","https://openalex.org/W2587321626","https://openalex.org/W2588207325","https://openalex.org/W2589592008","https://openalex.org/W2592367925","https://openalex.org/W2593591803","https://openalex.org/W2599417231","https://openalex.org/W2601346929","https://openalex.org/W2607669908","https://openalex.org/W2607811538","https://openalex.org/W2608515760","https://openalex.org/W2610929625","https://openalex.org/W2626097390","https://openalex.org/W2735537245","https://openalex.org/W2738685220","https://openalex.org/W2754579667","https://openalex.org/W2765111042","https://openalex.org/W2766358903","https://openalex.org/W2767445485","https://openalex.org/W2770269406","https://openalex.org/W2773939681","https://openalex.org/W2782978800","https://openalex.org/W2784179637","https://openalex.org/W2792451020","https://openalex.org/W2804476733","https://openalex.org/W2884978946","https://openalex.org/W2885323255","https://openalex.org/W2886408096","https://openalex.org/W2897322335","https://openalex.org/W2902711065","https://openalex.org/W2909145450","https://openalex.org/W2912656789","https://openalex.org/W2918926186","https://openalex.org/W2918965813","https://openalex.org/W2920716817","https://openalex.org/W2930816179","https://openalex.org/W2944253064","https://openalex.org/W2947461078","https://openalex.org/W2950529298","https://openalex.org/W2950976944","https://openalex.org/W2951160681","https://openalex.org/W2952152744","https://openalex.org/W2952720389","https://openalex.org/W2953229963","https://openalex.org/W2953309432","https://openalex.org/W2954753888","https://openalex.org/W2963276645","https://openalex.org/W2967163687","https://openalex.org/W4211054902","https://openalex.org/W4211208250","https://openalex.org/W4229513082","https://openalex.org/W4231539689","https://openalex.org/W4292656339","https://openalex.org/W6663385620","https://openalex.org/W6670514945","https://openalex.org/W6729038451","https://openalex.org/W6759780688","https://openalex.org/W6766935863","https://openalex.org/W6841529255"],"related_works":["https://openalex.org/W3043668926","https://openalex.org/W3036436206","https://openalex.org/W4389452281","https://openalex.org/W4238948313","https://openalex.org/W3111832393","https://openalex.org/W3000916974","https://openalex.org/W3183189600","https://openalex.org/W3134948850","https://openalex.org/W4394325869","https://openalex.org/W4394082811"],"abstract_inverted_index":{"Analyzing":[0],"the":[1,27,30,59,81,84,94,129],"microbiome":[2,31],"of":[3,23,29,61,71,83,88,136],"diverse":[4],"species":[5],"and":[6,20,40,43,46,55,65,102,104,123,127,142],"environments":[7],"using":[8],"next-generation":[9],"sequencing":[10,38,63,101,144],"techniques":[11],"has":[12],"significantly":[13],"enhanced":[14],"our":[15],"understanding":[16],"on":[17,80,114],"metabolic,":[18],"physiological":[19],"ecological":[21],"roles":[22],"environmental":[24],"microorganisms.":[25],"However,":[26],"analysis":[28,49],"is":[32,91],"affected":[33],"by":[34],"experimental":[35,115],"conditions":[36],"(e.g.":[37,50],"errors":[39],"genomic":[41],"repeats)":[42],"computationally":[44],"intensive":[45],"cumbersome":[47],"downstream":[48],"quality":[51],"control,":[52],"assembly,":[53,120],"binning":[54],"statistical":[56],"analyses).":[57],"Moreover,":[58],"introduction":[60],"new":[62,72],"technologies":[64],"protocols":[66,113],"led":[67],"to":[68,92,110],"a":[69,134],"flood":[70],"methodologies,":[73],"which":[74],"also":[75],"have":[76],"an":[77],"immediate":[78],"effect":[79],"results":[82],"analyses.":[85],"The":[86],"aim":[87],"this":[89],"work":[90],"review":[93],"most":[95],"important":[96],"workflows":[97,138],"for":[98,139],"16S":[99,140],"rRNA":[100,141],"shotgun":[103],"long-read":[105],"metagenomics,":[106],"as":[107,109],"well":[108],"provide":[111,133],"best-practice":[112,137],"design,":[116],"sample":[117],"processing,":[118],"sequencing,":[119],"binning,":[121],"annotation":[122],"visualization.":[124],"To":[125],"simplify":[126],"standardize":[128],"computational":[130],"analysis,":[131],"we":[132],"set":[135],"metagenomic":[143],"data":[145],"(available":[146],"at":[147],"https://github.com/grimmlab/MicrobiomeBestPracticeReview).":[148]},"counts_by_year":[{"year":2026,"cited_by_count":59},{"year":2025,"cited_by_count":127},{"year":2024,"cited_by_count":107},{"year":2023,"cited_by_count":110},{"year":2022,"cited_by_count":83},{"year":2021,"cited_by_count":81},{"year":2020,"cited_by_count":12}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
