{"id":"https://openalex.org/W2997757919","doi":"https://doi.org/10.1093/bib/bbz150","title":"BioMedR: an R/CRAN package for integrated data analysis pipeline in biomedical study","display_name":"BioMedR: an R/CRAN package for integrated data analysis pipeline in biomedical study","publication_year":2019,"publication_date":"2019-10-31","ids":{"openalex":"https://openalex.org/W2997757919","doi":"https://doi.org/10.1093/bib/bbz150","mag":"2997757919","pmid":"https://pubmed.ncbi.nlm.nih.gov/31885044"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz150","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz150","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004795100","display_name":"Jie Dong","orcid":"https://orcid.org/0000-0002-3324-9000"},"institutions":[{"id":"https://openalex.org/I119273862","display_name":"Central South University of Forestry and Technology","ror":"https://ror.org/02czw2k81","country_code":"CN","type":"education","lineage":["https://openalex.org/I119273862"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Dong","raw_affiliation_strings":["National Engineering Laboratory for Deep Processing of Rice and Byproducts, Hunan Key Laboratory of Processed Food for Special Medical Purpose, College of Food Science and Engineering, Central South University of Forestry and Technology, Changsha,410003 P. R. China","Xiangya School of Pharmaceutical Sciences, Central South University, Changsha, 410003 P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Deep Processing of Rice and Byproducts, Hunan Key Laboratory of Processed Food for Special Medical Purpose, College of Food Science and Engineering, Central South University of Forestry and Technology, Changsha,410003 P. R. China","institution_ids":["https://openalex.org/I119273862","https://openalex.org/I139660479"]},{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, Changsha, 410003 P. R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010441587","display_name":"Minfeng Zhu","orcid":"https://orcid.org/0000-0002-6711-3099"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min-Feng Zhu","raw_affiliation_strings":["Xiangya School of Pharmaceutical Sciences, Central South University, Changsha, 410003 P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, Changsha, 410003 P. R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057587594","display_name":"Yong\u2010Huan Yun","orcid":"https://orcid.org/0000-0003-1777-3205"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong-Huan Yun","raw_affiliation_strings":["College of Food Science and Engineering, Hainan University, Haikou, 570228 PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Engineering, Hainan University, Haikou, 570228 PR China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076594495","display_name":"Aiping L\u00fc","orcid":"https://orcid.org/0000-0002-2303-0494"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ai-Ping Lu","raw_affiliation_strings":["Institute for Advancing Translational Medicine in Bone & Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advancing Translational Medicine in Bone & Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, P. R. China","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028525523","display_name":"Tingjun Hou","orcid":"https://orcid.org/0000-0001-7227-2580"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ting-Jun Hou","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058 Zhejiang, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058 Zhejiang, P. R. China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083809384","display_name":"Dongsheng Cao","orcid":"https://orcid.org/0000-0003-3604-3785"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Dong-Sheng Cao","raw_affiliation_strings":["Institute for Advancing Translational Medicine in Bone & Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, P. R. China","Xiangya School of Pharmaceutical Sciences, Central South University, Changsha, 410003 P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advancing Translational Medicine in Bone & Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, P. R. China","institution_ids":["https://openalex.org/I141568987"]},{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, Changsha, 410003 P. R. China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028525523","https://openalex.org/A5083809384"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I141568987","https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.8189,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.8731487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"22","issue":"1","first_page":"474","last_page":"484"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.3449999988079071,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.3449999988079071,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.18529999256134033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.15469999611377716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.750857412815094},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7504768371582031},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7151402235031128},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.611975908279419},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5931396484375},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5269164443016052},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5045639276504517},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.49673110246658325},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4609909653663635},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4266999661922455},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.41618338227272034},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32222747802734375},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26425081491470337},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24649065732955933},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1550983190536499},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.11468261480331421},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10037070512771606}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.750857412815094},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7504768371582031},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7151402235031128},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.611975908279419},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5931396484375},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5269164443016052},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5045639276504517},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.49673110246658325},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4609909653663635},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4266999661922455},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.41618338227272034},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32222747802734375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26425081491470337},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24649065732955933},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1550983190536499},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.11468261480331421},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10037070512771606},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbz150","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz150","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31885044","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31885044","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2260806423","display_name":"\u57fa\u4e8e\u86cb\u767d\u7ed3\u6784\u7684\u6210\u836f\u6027\u9884\u6d4b\u65b0\u65b9\u6cd5\u7814\u7a76","funder_award_id":"21575128","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7991011545","display_name":null,"funder_award_id":"81773632","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8871686804","display_name":null,"funder_award_id":"2019JJ51003","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W610737444","https://openalex.org/W830547093","https://openalex.org/W1517465908","https://openalex.org/W1831050183","https://openalex.org/W1862448690","https://openalex.org/W1898375943","https://openalex.org/W1901616594","https://openalex.org/W1943237984","https://openalex.org/W1955951250","https://openalex.org/W1957147548","https://openalex.org/W1977405994","https://openalex.org/W1983478747","https://openalex.org/W1983817726","https://openalex.org/W1988195734","https://openalex.org/W2001168095","https://openalex.org/W2009113274","https://openalex.org/W2010453137","https://openalex.org/W2011430131","https://openalex.org/W2034070267","https://openalex.org/W2043764521","https://openalex.org/W2062533676","https://openalex.org/W2075692164","https://openalex.org/W2099308584","https://openalex.org/W2099862356","https://openalex.org/W2100563036","https://openalex.org/W2123525093","https://openalex.org/W2138512826","https://openalex.org/W2153838454","https://openalex.org/W2157446903","https://openalex.org/W2159887157","https://openalex.org/W2160257187","https://openalex.org/W2162011385","https://openalex.org/W2163480486","https://openalex.org/W2167212630","https://openalex.org/W2171464043","https://openalex.org/W2173801226","https://openalex.org/W2195203261","https://openalex.org/W2258865027","https://openalex.org/W2362265365","https://openalex.org/W2464597724","https://openalex.org/W2471950830","https://openalex.org/W2492873402","https://openalex.org/W2499544982","https://openalex.org/W2544745230","https://openalex.org/W2565379041","https://openalex.org/W2591883888","https://openalex.org/W2622236128","https://openalex.org/W2794498378","https://openalex.org/W2801991413","https://openalex.org/W2887442076","https://openalex.org/W2910591656","https://openalex.org/W2915536738","https://openalex.org/W6600399310","https://openalex.org/W6630838510","https://openalex.org/W6728933153"],"related_works":["https://openalex.org/W1573015311","https://openalex.org/W2889938001","https://openalex.org/W4386509167","https://openalex.org/W3165034028","https://openalex.org/W1570419641","https://openalex.org/W4293771607","https://openalex.org/W2296499206","https://openalex.org/W132037564","https://openalex.org/W3210319767","https://openalex.org/W2074440087"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2],"increasing":[3],"development":[4],"of":[5,86,111,118,124,134,150,168,228],"biotechnology":[6],"and":[7,15,31,63,89,115,131,147,165,184,211,219,234,238,247],"information":[8,23],"technology,":[9],"publicly":[10],"available":[11,103,244],"data":[12,39,68,92,205,207,212],"in":[13,24],"chemistry":[14],"biology":[16],"are":[17,71],"undergoing":[18],"explosive":[19],"growth.":[20],"Such":[21],"wealthy":[22],"these":[25,76],"resources":[26],"needs":[27],"to":[28,34,49,82,223],"be":[29],"extracted":[30],"then":[32],"transformed":[33],"useful":[35,193],"knowledge":[36],"by":[37],"various":[38,91],"mining":[40,69,93],"methods.":[41],"However,":[42],"a":[43,101,217],"main":[44],"computational":[45],"challenge":[46],"is":[47,95,243],"how":[48],"effectively":[50],"represent":[51,83],"or":[52],"encode":[53],"molecular":[54,87,109,129,135,229],"objects":[55,88,230],"under":[56],"investigation":[57],"such":[58],"as":[59,189,191],"chemicals,":[60,112],"proteins,":[61,113],"DNAs":[62,114],"even":[64],"complicated":[65,77],"interactions":[66],"when":[67],"methods":[70,183],"employed.":[72],"To":[73],"further":[74],"explore":[75],"data,":[78],"an":[79,200],"integrated":[80,201],"toolkit":[81],"different":[84,173,226],"types":[85,149,167],"support":[90],"algorithms":[94,188],"urgently":[96],"needed.":[97],"RESULTS:":[98],"We":[99],"developed":[100],"freely":[102],"R/CRAN":[104],"package,":[105],"called":[106],"BioMedR,":[107],"for":[108,137,154,204],"representations":[110,227],"pairwise":[116],"samples":[117],"their":[119],"interactions.":[120],"The":[121],"current":[122],"version":[123],"BioMedR":[125,215],"could":[126],"calculate":[127],"293":[128],"descriptors":[130,142,153,161,170],"13":[132],"kinds":[133],"fingerprints":[136],"small":[138],"molecules,":[139],"9920":[140],"protein":[141,145],"based":[143],"on":[144],"sequences":[146,164],"six":[148,166],"generalized":[151],"scale-based":[152],"proteochemometric":[155],"modeling,":[156],"more":[157],"than":[158],"6000":[159],"DNA":[160],"from":[162],"nucleotide":[163],"interaction":[169],"using":[171],"three":[172],"combining":[174],"strategies.":[175],"Moreover,":[176],"this":[177],"package":[178,222],"realized":[179],"five":[180],"similarity":[181],"calculation":[182,210],"four":[185],"powerful":[186],"clustering":[187],"well":[190],"several":[192],"auxiliary":[194],"tools,":[195],"which":[196],"aims":[197],"at":[198],"building":[199],"analysis":[202],"pipeline":[203],"acquisition,":[206],"checking,":[208],"descriptor":[209],"modeling.":[213],"CONCLUSION:":[214],"provides":[216],"comprehensive":[218],"uniform":[220],"R":[221],"link":[224],"up":[225],"with":[231],"each":[232],"other":[233,239],"will":[235],"benefit":[236],"cheminformatics/bioinformatics":[237],"biomedical":[240],"users.":[241],"It":[242],"at:":[245],"https://CRAN.R-project.org/package=BioMedR":[246],"https://github.com/wind22zhu/BioMedR/.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
