{"id":"https://openalex.org/W2996474037","doi":"https://doi.org/10.1093/bib/bbz144","title":"Deep learning of pharmacogenomics resources: moving towards precision oncology","display_name":"Deep learning of pharmacogenomics resources: moving towards precision oncology","publication_year":2019,"publication_date":"2019-10-24","ids":{"openalex":"https://openalex.org/W2996474037","doi":"https://doi.org/10.1093/bib/bbz144","mag":"2996474037","pmid":"https://pubmed.ncbi.nlm.nih.gov/31813953"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz144","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz144","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7711267","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028190064","display_name":"Yu\u2010Chiao Chiu","orcid":"https://orcid.org/0000-0003-1647-8634"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu-Chiao Chiu","raw_affiliation_strings":["Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109230310","display_name":"Hung-I Harry Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hung-I Harry Chen","raw_affiliation_strings":["Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059087647","display_name":"Aparna Gorthi","orcid":"https://orcid.org/0000-0001-5935-4098"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aparna Gorthi","raw_affiliation_strings":["Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078442483","display_name":"Milad Mostavi","orcid":null},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Milad Mostavi","raw_affiliation_strings":["Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005930092","display_name":"Siyuan Zheng","orcid":"https://orcid.org/0000-0002-1031-9424"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siyuan Zheng","raw_affiliation_strings":["Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100689057","display_name":"Yidong Chen","orcid":"https://orcid.org/0000-0001-6806-2185"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yidong Chen","raw_affiliation_strings":["Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children\u2019s Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I165951966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5068887242","https://openalex.org/A5100689057"],"corresponding_institution_ids":["https://openalex.org/I165951966","https://openalex.org/I45438204"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":7.3832,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.97645832,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"21","issue":"6","first_page":"2066","last_page":"2083"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.979619562625885},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.7541499733924866},{"id":"https://openalex.org/keywords/decipher","display_name":"DECIPHER","score":0.7318378686904907},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5734336972236633},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5686015486717224},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.5565961003303528},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.5367907285690308},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5015859603881836},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.463304340839386},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4477338194847107},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44107529520988464},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.4408632218837738},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4148217737674713},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.39933207631111145},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.381908655166626},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.33575400710105896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25274553894996643},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2504851818084717},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.21659240126609802},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14874067902565002},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1254459023475647},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08953899145126343},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08542093634605408}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.979619562625885},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.7541499733924866},{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.7318378686904907},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5734336972236633},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5686015486717224},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.5565961003303528},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.5367907285690308},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5015859603881836},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.463304340839386},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4477338194847107},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44107529520988464},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.4408632218837738},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4148217737674713},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.39933207631111145},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.381908655166626},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.33575400710105896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25274553894996643},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2504851818084717},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.21659240126609802},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14874067902565002},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1254459023475647},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08953899145126343},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08542093634605408},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbz144","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz144","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31813953","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31813953","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7711267","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7711267","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7711267","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7711267","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.49000000953674316,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":187,"referenced_works":["https://openalex.org/W610737444","https://openalex.org/W1019830208","https://openalex.org/W1191850142","https://openalex.org/W1738019091","https://openalex.org/W1802551232","https://openalex.org/W1825675169","https://openalex.org/W1862448690","https://openalex.org/W1871096589","https://openalex.org/W1912672559","https://openalex.org/W1936243389","https://openalex.org/W1975147762","https://openalex.org/W1975875968","https://openalex.org/W1979900513","https://openalex.org/W1992452843","https://openalex.org/W2010457001","https://openalex.org/W2018044006","https://openalex.org/W2018838463","https://openalex.org/W2018843280","https://openalex.org/W2021630848","https://openalex.org/W2024224430","https://openalex.org/W2036291018","https://openalex.org/W2043398720","https://openalex.org/W2044406093","https://openalex.org/W2044702943","https://openalex.org/W2048692987","https://openalex.org/W2051224630","https://openalex.org/W2096283457","https://openalex.org/W2098889731","https://openalex.org/W2099308584","https://openalex.org/W2103184242","https://openalex.org/W2104549677","https://openalex.org/W2107515803","https://openalex.org/W2108068107","https://openalex.org/W2108933868","https://openalex.org/W2121906867","https://openalex.org/W2124955716","https://openalex.org/W2127069089","https://openalex.org/W2129860849","https://openalex.org/W2130072062","https://openalex.org/W2130410032","https://openalex.org/W2132619562","https://openalex.org/W2152883907","https://openalex.org/W2155478691","https://openalex.org/W2159457208","https://openalex.org/W2159887157","https://openalex.org/W2162755712","https://openalex.org/W2164298117","https://openalex.org/W2165618135","https://openalex.org/W2165698076","https://openalex.org/W2167395325","https://openalex.org/W2168102484","https://openalex.org/W2169678694","https://openalex.org/W2175970000","https://openalex.org/W2177317049","https://openalex.org/W2177508090","https://openalex.org/W2191030086","https://openalex.org/W2197241765","https://openalex.org/W2198606573","https://openalex.org/W2214074259","https://openalex.org/W2220553089","https://openalex.org/W2230320310","https://openalex.org/W2240067561","https://openalex.org/W2294516783","https://openalex.org/W2299417213","https://openalex.org/W2311607323","https://openalex.org/W2312361311","https://openalex.org/W2318806991","https://openalex.org/W2327958231","https://openalex.org/W2397757171","https://openalex.org/W2428865981","https://openalex.org/W2433743436","https://openalex.org/W2461427403","https://openalex.org/W2468543693","https://openalex.org/W2479356696","https://openalex.org/W2484603661","https://openalex.org/W2499544982","https://openalex.org/W2502949459","https://openalex.org/W2519019522","https://openalex.org/W2529996553","https://openalex.org/W2534924637","https://openalex.org/W2555803041","https://openalex.org/W2558999090","https://openalex.org/W2559028527","https://openalex.org/W2560367415","https://openalex.org/W2560520948","https://openalex.org/W2567534979","https://openalex.org/W2578240541","https://openalex.org/W2586159641","https://openalex.org/W2586862787","https://openalex.org/W2594183968","https://openalex.org/W2608863179","https://openalex.org/W2610148085","https://openalex.org/W2610332124","https://openalex.org/W2612436700","https://openalex.org/W2612467560","https://openalex.org/W2614443510","https://openalex.org/W2618999197","https://openalex.org/W2736137960","https://openalex.org/W2741363425","https://openalex.org/W2741508285","https://openalex.org/W2741564801","https://openalex.org/W2753919178","https://openalex.org/W2755948321","https://openalex.org/W2761275051","https://openalex.org/W2761668583","https://openalex.org/W2766799607","https://openalex.org/W2767801660","https://openalex.org/W2767891136","https://openalex.org/W2773987374","https://openalex.org/W2775061087","https://openalex.org/W2781256610","https://openalex.org/W2783674487","https://openalex.org/W2784057214","https://openalex.org/W2784341656","https://openalex.org/W2786230348","https://openalex.org/W2789869568","https://openalex.org/W2789924919","https://openalex.org/W2790179710","https://openalex.org/W2790203313","https://openalex.org/W2790808809","https://openalex.org/W2791355014","https://openalex.org/W2795257806","https://openalex.org/W2795686629","https://openalex.org/W2797198170","https://openalex.org/W2797883881","https://openalex.org/W2800595743","https://openalex.org/W2803116354","https://openalex.org/W2803256172","https://openalex.org/W2807463161","https://openalex.org/W2817817898","https://openalex.org/W2837999301","https://openalex.org/W2883919658","https://openalex.org/W2886544065","https://openalex.org/W2890336406","https://openalex.org/W2893531376","https://openalex.org/W2895420596","https://openalex.org/W2899070097","https://openalex.org/W2900778061","https://openalex.org/W2906092989","https://openalex.org/W2911954305","https://openalex.org/W2911969472","https://openalex.org/W2919115771","https://openalex.org/W2922229918","https://openalex.org/W2935703330","https://openalex.org/W2936686072","https://openalex.org/W2937307539","https://openalex.org/W2937917790","https://openalex.org/W2946099214","https://openalex.org/W2946201643","https://openalex.org/W2949986955","https://openalex.org/W2951209146","https://openalex.org/W2953067954","https://openalex.org/W2962851944","https://openalex.org/W2963046727","https://openalex.org/W2963374347","https://openalex.org/W2963408132","https://openalex.org/W2963445908","https://openalex.org/W2965506096","https://openalex.org/W2970852745","https://openalex.org/W2971690404","https://openalex.org/W3014321973","https://openalex.org/W3086347240","https://openalex.org/W3098269892","https://openalex.org/W3100751385","https://openalex.org/W3106417893","https://openalex.org/W4205916403","https://openalex.org/W4213151958","https://openalex.org/W4289744743","https://openalex.org/W6637865168","https://openalex.org/W6638389677","https://openalex.org/W6679216438","https://openalex.org/W6685133223","https://openalex.org/W6687441787","https://openalex.org/W6689885438","https://openalex.org/W6698064614","https://openalex.org/W6717587613","https://openalex.org/W6729249414","https://openalex.org/W6730101001","https://openalex.org/W6738337739","https://openalex.org/W6741650436","https://openalex.org/W6747280525","https://openalex.org/W6753250768","https://openalex.org/W6753706923","https://openalex.org/W6756461888","https://openalex.org/W6763093027","https://openalex.org/W6766770765","https://openalex.org/W6806035453"],"related_works":["https://openalex.org/W4226103442","https://openalex.org/W4231349869","https://openalex.org/W1508732282","https://openalex.org/W2159063798","https://openalex.org/W2999563835","https://openalex.org/W3154648057","https://openalex.org/W2068142083","https://openalex.org/W2609331662","https://openalex.org/W3193181239","https://openalex.org/W3115128611"],"abstract_inverted_index":{"The":[0],"recent":[1],"accumulation":[2,161],"of":[3,34,64,70,74,83,86,107,109,111,140,156,162,183,200],"cancer":[4,77,130,174],"genomic":[5,15],"data":[6,122,128,163],"provides":[7,179],"an":[8,180],"opportunity":[9],"to":[10,21,47,165,196],"understand":[11],"how":[12],"a":[13,28,44,98],"tumor's":[14],"characteristics":[16],"can":[17],"affect":[18],"its":[19],"responses":[20],"drugs.":[22],"This":[23],"field,":[24],"called":[25],"pharmacogenomics,":[26],"is":[27],"key":[29],"area":[30],"in":[31,72],"the":[32,58,68,105,144,153,198],"development":[33],"precision":[35,201],"oncology.":[36,202],"Deep":[37],"learning":[38],"(DL)":[39],"methodology":[40],"has":[41],"emerged":[42],"as":[43,125],"powerful":[45],"technique":[46],"characterize":[48],"and":[49,60,76,80,89,102,104,120,134,136,187,191,194],"learn":[50],"from":[51],"rapidly":[52],"accumulating":[53],"pharmacogenomics":[54,121,189],"data.":[55],"We":[56,66],"introduce":[57],"fundamentals":[59],"typical":[61],"model":[62],"architectures":[63],"DL.":[65],"review":[67,178],"use":[69],"DL":[71,157,185],"classification":[73],"cancers":[75],"subtypes":[78],"(diagnosis":[79],"treatment":[81],"stratification":[82],"patients),":[84],"prediction":[85],"drug":[87,90,100,168],"response":[88,169],"synergy":[91],"for":[92,97,129],"individual":[93],"tumors":[94],"(treatment":[95],"prioritization":[96],"patient),":[99],"repositioning":[101],"discovery":[103],"study":[106],"mechanism/mode":[108],"action":[110],"treatments.":[112],"For":[113],"each":[114],"topic,":[115],"we":[116,151],"summarize":[117],"current":[118],"genomics":[119,127],"resources":[123,164,190],"such":[124],"pan-cancer":[126],"cell":[131],"lines":[132],"(CCLs)":[133],"tumors,":[135],"systematic":[137],"pharmacologic":[138],"screens":[139],"CCLs.":[141],"By":[142],"revisiting":[143],"published":[145],"literature,":[146],"including":[147],"our":[148],"in-house":[149],"analyses,":[150],"demonstrate":[152],"unprecedented":[154],"capability":[155],"enabled":[158],"by":[159],"rapid":[160],"decipher":[166],"complex":[167],"patterns,":[170],"thus":[171],"potentially":[172],"improving":[173],"medicine.":[175],"Overall,":[176],"this":[177],"in-depth":[181],"summary":[182],"state-of-the-art":[184],"methods":[186],"up-to-date":[188],"future":[192],"opportunities":[193],"challenges":[195],"realize":[197],"goal":[199]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
