{"id":"https://openalex.org/W2990975805","doi":"https://doi.org/10.1093/bib/bbz121","title":"A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping","display_name":"A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping","publication_year":2019,"publication_date":"2019-09-04","ids":{"openalex":"https://openalex.org/W2990975805","doi":"https://doi.org/10.1093/bib/bbz121","mag":"2990975805","pmid":"https://pubmed.ncbi.nlm.nih.gov/31774481"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz121","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbz121/31143281/bbz121.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbz121/31143281/bbz121.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036977693","display_name":"Anita Sathyanarayanan","orcid":"https://orcid.org/0000-0001-8385-5618"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Anita Sathyanarayanan","raw_affiliation_strings":["School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053349247","display_name":"Rohit Gupta","orcid":"https://orcid.org/0000-0002-5873-7510"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rohit Gupta","raw_affiliation_strings":["Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India","Department of Computational Biology, Indraprastha Institute of Information Technology, Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029344208","display_name":"Erik W. Thompson","orcid":"https://orcid.org/0000-0002-9723-4924"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Erik W Thompson","raw_affiliation_strings":["School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia","Translational Research Institute, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]},{"raw_affiliation_string":"Translational Research Institute, Brisbane, Australia","institution_ids":["https://openalex.org/I1308309334"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042709773","display_name":"Dale R. Nyholt","orcid":"https://orcid.org/0000-0001-7159-3040"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dale R Nyholt","raw_affiliation_strings":["School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107979977","display_name":"Denis C. Bauer","orcid":"https://orcid.org/0000-0001-8033-9810"},"institutions":[{"id":"https://openalex.org/I4210142128","display_name":"CSIRO Health and Biosecurity","ror":"https://ror.org/03jh4jw93","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210142128","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Denis C Bauer","raw_affiliation_strings":["CSIRO, Health & Biosecurity, Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIRO, Health & Biosecurity, Sydney, Australia","institution_ids":["https://openalex.org/I4210142128"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031660373","display_name":"Shivashankar H. Nagaraj","orcid":"https://orcid.org/0000-0003-3463-6835"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Shivashankar H Nagaraj","raw_affiliation_strings":["School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia","Translational Research Institute, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, Faculty of Health, and Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]},{"raw_affiliation_string":"Translational Research Institute, Brisbane, Australia","institution_ids":["https://openalex.org/I1308309334"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031660373","https://openalex.org/A5036977693"],"corresponding_institution_ids":["https://openalex.org/I1308309334","https://openalex.org/I160993911"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.8191,"has_fulltext":true,"cited_by_count":72,"citation_normalized_percentile":{"value":0.91735463,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"21","issue":"6","first_page":"1920","last_page":"1936"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.9750345945358276},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.710001528263092},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5586313009262085},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4199543297290802},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39608412981033325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3111163377761841},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14541670680046082},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06086850166320801}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.9750345945358276},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.710001528263092},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5586313009262085},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4199543297290802},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39608412981033325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3111163377761841},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14541670680046082},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06086850166320801},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbz121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz121","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbz121/31143281/bbz121.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31774481","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31774481","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.qut.edu.au:197177","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/197177/1/134859.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics","raw_type":"Contribution to Journal"},{"id":"pmh:oai:pubmedcentral.nih.gov:7711266","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7711266","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbz121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz121","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbz121/31143281/bbz121.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320983","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752"},{"id":"https://openalex.org/F4320335344","display_name":"Advance Queensland","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2990975805.pdf","grobid_xml":"https://content.openalex.org/works/W2990975805.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1831050183","https://openalex.org/W1950829641","https://openalex.org/W1967220865","https://openalex.org/W1969298821","https://openalex.org/W1973978516","https://openalex.org/W1984807040","https://openalex.org/W1987219048","https://openalex.org/W1989277387","https://openalex.org/W1993126557","https://openalex.org/W1999574084","https://openalex.org/W2002037649","https://openalex.org/W2005895632","https://openalex.org/W2016661249","https://openalex.org/W2020541351","https://openalex.org/W2023461603","https://openalex.org/W2035618305","https://openalex.org/W2055214702","https://openalex.org/W2059300459","https://openalex.org/W2061908600","https://openalex.org/W2095763169","https://openalex.org/W2095809779","https://openalex.org/W2096283457","https://openalex.org/W2100438487","https://openalex.org/W2101695910","https://openalex.org/W2109816625","https://openalex.org/W2113018749","https://openalex.org/W2117692326","https://openalex.org/W2121906867","https://openalex.org/W2123040085","https://openalex.org/W2125939156","https://openalex.org/W2134469465","https://openalex.org/W2135046866","https://openalex.org/W2137124858","https://openalex.org/W2142958935","https://openalex.org/W2149441684","https://openalex.org/W2156138784","https://openalex.org/W2157852151","https://openalex.org/W2159080219","https://openalex.org/W2161368206","https://openalex.org/W2167996825","https://openalex.org/W2172557341","https://openalex.org/W2180481128","https://openalex.org/W2262414037","https://openalex.org/W2264481086","https://openalex.org/W2307267906","https://openalex.org/W2329659234","https://openalex.org/W2339350795","https://openalex.org/W2570401594","https://openalex.org/W2574349495","https://openalex.org/W2588585220","https://openalex.org/W2611138580","https://openalex.org/W2624701078","https://openalex.org/W2625559053","https://openalex.org/W2748710555","https://openalex.org/W2776619248","https://openalex.org/W2783685429","https://openalex.org/W2796153225","https://openalex.org/W2802392588","https://openalex.org/W2809373965","https://openalex.org/W2897299514","https://openalex.org/W2950985821","https://openalex.org/W2951880440","https://openalex.org/W3104123570","https://openalex.org/W3104603736","https://openalex.org/W4234935126","https://openalex.org/W6680156768","https://openalex.org/W6746253286","https://openalex.org/W6785526824"],"related_works":["https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W1462775415","https://openalex.org/W1987896487","https://openalex.org/W4229853287","https://openalex.org/W1535483699","https://openalex.org/W2333832190","https://openalex.org/W2068445477"],"abstract_inverted_index":{"Oncogenesis":[0],"and":[1,22,33,46,52,72,95,112,129,158,168,174,180],"cancer":[2,114],"can":[3],"arise":[4],"as":[5,152],"a":[6,9,44],"consequence":[7],"of":[8,12,49,54,85,98,118,149,176],"wide":[10],"range":[11],"genomic":[13],"aberrations":[14],"including":[15],"mutations,":[16],"copy":[17],"number":[18,84],"alterations,":[19],"expression":[20],"changes":[21],"epigenetic":[23],"modifications":[24],"encompassing":[25],"multiple":[26],"omics":[27],"layers.":[28],"Integrating":[29],"genomic,":[30],"transcriptomic,":[31],"proteomic":[32],"epigenomic":[34],"datasets":[35],"via":[36],"multi-omics":[37,63,99,161,183],"analysis":[38],"provides":[39],"the":[40,50,119,126,140,147,177],"opportunity":[41],"to":[42,61,91],"derive":[43],"deeper":[45],"holistic":[47],"understanding":[48],"development":[51],"progression":[53],"cancer.":[55],"There":[56],"are":[57,89],"two":[58],"primary":[59],"approaches":[60],"integrating":[62],"data:":[64],"multi-staged":[65,94,120],"(focused":[66,74],"on":[67,75,139,160],"identifying":[68],"genes":[69],"driving":[70],"cancer)":[71],"meta-dimensional":[73,96,133],"establishing":[76],"clinically":[77],"relevant":[78],"tumour":[79],"or":[80],"sample":[81,141,155],"classifications).":[82],"A":[83],"ready-to-use":[86],"bioinformatics":[87],"tools":[88,109,122,135],"available":[90],"perform":[92],"both":[93],"integration":[97,108,121,134,184],"data.":[100],"In":[101],"this":[102],"study,":[103],"we":[104,145],"compared":[105],"nine":[106],"different":[107],"using":[110],"real":[111],"simulated":[113],"datasets.":[115],"The":[116],"performance":[117],"were":[123,136],"assessed":[124,137],"at":[125],"gene,":[127],"function":[128],"pathway":[130],"levels,":[131],"while":[132],"based":[138],"classification":[142],"performance.":[143],"Additionally,":[144],"discuss":[146],"influence":[148],"factors":[150],"such":[151],"data":[153,162],"representation,":[154],"size,":[156],"signal":[157],"noise":[159],"integration.":[163],"Our":[164],"results":[165],"provide":[166],"current":[167],"much":[169],"needed":[170],"guidance":[171],"regarding":[172],"selection":[173],"use":[175],"most":[178],"appropriate":[179],"best":[181],"performing":[182],"tools.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":8}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
