{"id":"https://openalex.org/W2992098192","doi":"https://doi.org/10.1093/bib/bbz099","title":"Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data","display_name":"Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data","publication_year":2019,"publication_date":"2019-07-11","ids":{"openalex":"https://openalex.org/W2992098192","doi":"https://doi.org/10.1093/bib/bbz099","mag":"2992098192","pmid":"https://pubmed.ncbi.nlm.nih.gov/31792498"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz099","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz099","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2434/698049","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083679542","display_name":"Matteo Chiara","orcid":"https://orcid.org/0000-0003-3983-4961"},"institutions":[{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Matteo Chiara","raw_affiliation_strings":["Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046629951","display_name":"Federico Zambelli","orcid":"https://orcid.org/0000-0003-3487-4331"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federico Zambelli","raw_affiliation_strings":["Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087315441","display_name":"Ernesto Picardi","orcid":"https://orcid.org/0000-0002-6549-0114"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ernesto Picardi","raw_affiliation_strings":["Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \u201cA. Moro\u201d, Via Orabona 4, 70126 Bari, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Via Orabona 4, 70126 Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \u201cA. Moro\u201d, Via Orabona 4, 70126 Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]},{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Via Orabona 4, 70126 Bari, Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032504955","display_name":"David S. Horner","orcid":"https://orcid.org/0000-0002-6739-2657"},"institutions":[{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"David S Horner","raw_affiliation_strings":["Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \u201cA. Moro\u201d, Via Orabona 4, 70126 Bari, Italy","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Via Orabona 4, 70126 Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \u201cA. Moro\u201d, Via Orabona 4, 70126 Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy","institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210148743"]},{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari \"A. Moro\", Via Orabona 4, 70126 Bari, Italy","institution_ids":["https://openalex.org/I5561750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005312066"],"corresponding_institution_ids":["https://openalex.org/I4210148743","https://openalex.org/I4210155236","https://openalex.org/I5561750"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.2953,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.77500396,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"6","first_page":"1971","last_page":"1986"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microsatellite","display_name":"Microsatellite","score":0.7877706289291382},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.7754188776016235},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6211352348327637},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4830937385559082},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45666295289993286},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4539404511451721},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4462588131427765},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34797799587249756},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32853156328201294},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3217207193374634},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.2663302719593048},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13712602853775024}],"concepts":[{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.7877706289291382},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.7754188776016235},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6211352348327637},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4830937385559082},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45666295289993286},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4539404511451721},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4462588131427765},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34797799587249756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32853156328201294},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3217207193374634},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.2663302719593048},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13712602853775024}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbz099","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz099","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31792498","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31792498","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:air.unimi.it:2434/698049","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/698049","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ricerca.uniba.it:11586/263830","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/263830","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:air.unimi.it:2434/698049","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/698049","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":113,"referenced_works":["https://openalex.org/W144840823","https://openalex.org/W1175815497","https://openalex.org/W1492929429","https://openalex.org/W1513749224","https://openalex.org/W1544712555","https://openalex.org/W1579730317","https://openalex.org/W1685989555","https://openalex.org/W1907868928","https://openalex.org/W1912672559","https://openalex.org/W1921457844","https://openalex.org/W1955667810","https://openalex.org/W1965975446","https://openalex.org/W1968709543","https://openalex.org/W1971047357","https://openalex.org/W1972711321","https://openalex.org/W1972746354","https://openalex.org/W1973067702","https://openalex.org/W1985474993","https://openalex.org/W1985714764","https://openalex.org/W1986071629","https://openalex.org/W1986594553","https://openalex.org/W1988825354","https://openalex.org/W1992859192","https://openalex.org/W1994285647","https://openalex.org/W1994674028","https://openalex.org/W2003908493","https://openalex.org/W2010735809","https://openalex.org/W2013488820","https://openalex.org/W2015212944","https://openalex.org/W2020670092","https://openalex.org/W2025327704","https://openalex.org/W2035469082","https://openalex.org/W2035489374","https://openalex.org/W2036528207","https://openalex.org/W2037606715","https://openalex.org/W2038220637","https://openalex.org/W2039105435","https://openalex.org/W2039230344","https://openalex.org/W2042910318","https://openalex.org/W2043258452","https://openalex.org/W2051317473","https://openalex.org/W2053187937","https://openalex.org/W2058507386","https://openalex.org/W2062181873","https://openalex.org/W2063685191","https://openalex.org/W2078217107","https://openalex.org/W2083870688","https://openalex.org/W2088189141","https://openalex.org/W2094295378","https://openalex.org/W2098670658","https://openalex.org/W2104549677","https://openalex.org/W2117896563","https://openalex.org/W2121427560","https://openalex.org/W2121729186","https://openalex.org/W2127004733","https://openalex.org/W2129286776","https://openalex.org/W2129447571","https://openalex.org/W2138044148","https://openalex.org/W2138167972","https://openalex.org/W2139123778","https://openalex.org/W2144325802","https://openalex.org/W2150523249","https://openalex.org/W2157632837","https://openalex.org/W2159772205","https://openalex.org/W2159854077","https://openalex.org/W2162758337","https://openalex.org/W2167119720","https://openalex.org/W2170093293","https://openalex.org/W2170574599","https://openalex.org/W2171787842","https://openalex.org/W2195724570","https://openalex.org/W2231855915","https://openalex.org/W2256016639","https://openalex.org/W2300163041","https://openalex.org/W2312976925","https://openalex.org/W2415697913","https://openalex.org/W2521004200","https://openalex.org/W2538143681","https://openalex.org/W2550586733","https://openalex.org/W2553342775","https://openalex.org/W2607669908","https://openalex.org/W2738091449","https://openalex.org/W2749208916","https://openalex.org/W2749353307","https://openalex.org/W2750953375","https://openalex.org/W2765283293","https://openalex.org/W2766406066","https://openalex.org/W2766504919","https://openalex.org/W2790911965","https://openalex.org/W2792035812","https://openalex.org/W2792451020","https://openalex.org/W2809659377","https://openalex.org/W2810377318","https://openalex.org/W2888648680","https://openalex.org/W2896559313","https://openalex.org/W2899614295","https://openalex.org/W2900006155","https://openalex.org/W2906449866","https://openalex.org/W2941751232","https://openalex.org/W2950354111","https://openalex.org/W2950369258","https://openalex.org/W2950609999","https://openalex.org/W2951529834","https://openalex.org/W2952870794","https://openalex.org/W2987237172","https://openalex.org/W4210666392","https://openalex.org/W4236100085","https://openalex.org/W4237255420","https://openalex.org/W6637413186","https://openalex.org/W6680781076","https://openalex.org/W6680875168","https://openalex.org/W6745460002","https://openalex.org/W6749245224"],"related_works":["https://openalex.org/W2272742151","https://openalex.org/W2005894993","https://openalex.org/W1594933590","https://openalex.org/W3008263562","https://openalex.org/W2062187879","https://openalex.org/W2141920333","https://openalex.org/W2367619012","https://openalex.org/W3146379411","https://openalex.org/W2040976733","https://openalex.org/W1528307809"],"abstract_inverted_index":{"A":[0],"number":[1],"of":[2,9,16,21,49,60,66,75,81,94,108,112,133,140,150,156,162,169,189],"studies":[3],"have":[4],"reported":[5],"the":[6,14,17,27,47,50,64,79,109,128,134,138,141,146,151,160,167,170,185],"successful":[7],"application":[8],"single-molecule":[10,113,178],"sequencing":[11,99,114,179],"technologies":[12,115,180],"to":[13],"determination":[15,80],"size":[18],"and":[19,44,84,89,166,187,193],"sequence":[20],"pathological":[22],"expanded":[23,67,163],"microsatellite":[24],"repeats":[25,68,165],"over":[26],"last":[28],"5":[29],"years.":[30],"However,":[31,123],"different":[32],"custom":[33],"bioinformatics":[34,76],"pipelines":[35],"were":[36],"employed":[37],"in":[38,158],"each":[39],"study,":[40],"preventing":[41],"meaningful":[42],"comparisons":[43],"somewhat":[45],"limiting":[46],"reproducibility":[48],"results.":[51],"In":[52],"this":[53],"review,":[54],"we":[55,124],"provide":[56],"a":[57,72,102],"brief":[58],"summary":[59],"state-of-the-art":[61],"methods":[62,129],"for":[63,78,137,184],"characterization":[65],"alleles,":[69],"along":[70],"with":[71],"detailed":[73],"comparison":[74],"tools":[77],"repeat":[82,191],"length":[83],"sequence,":[85],"using":[86],"both":[87,159],"real":[88],"simulated":[90],"data.":[91],"Our":[92],"reanalysis":[93],"publicly":[95],"available":[96],"human":[97],"genome":[98],"data":[100,142],"suggests":[101],"modest,":[103],"but":[104],"statistically":[105],"significant,":[106],"increase":[107],"error":[110],"rate":[111],"at":[116],"genomic":[117],"regions":[118],"containing":[119],"short":[120],"tandem":[121,164,190],"repeats.":[122],"observe":[125],"that":[126,174],"all":[127],"herein":[130],"tested,":[131],"irrespective":[132],"strategy":[135],"used":[136],"analysis":[139],"(either":[143],"based":[144,176],"on":[145,177],"alignment":[147],"or":[148],"assembly":[149],"reads),":[152],"show":[153],"high":[154],"levels":[155],"sensitivity":[157],"detection":[161,186],"estimation":[168],"expansion":[171],"size,":[172],"suggesting":[173],"approaches":[175],"are":[181],"highly":[182],"effective":[183],"quantification":[188],"expansions":[192],"contractions.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
