{"id":"https://openalex.org/W2988020351","doi":"https://doi.org/10.1093/bib/bbz082","title":"Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA\u2013TF\u2013gene network approach in humans and mice","display_name":"Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA\u2013TF\u2013gene network approach in humans and mice","publication_year":2019,"publication_date":"2019-06-17","ids":{"openalex":"https://openalex.org/W2988020351","doi":"https://doi.org/10.1093/bib/bbz082","mag":"2988020351","pmid":"https://pubmed.ncbi.nlm.nih.gov/31589286"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz082","pdf_url":"https://academic.oup.com/bib/article-pdf/21/4/1465/33584658/bbz082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/21/4/1465/33584658/bbz082.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100382838","display_name":"Aimin Li","orcid":"https://orcid.org/0000-0002-6983-2310"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Aimin Li","raw_affiliation_strings":["Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, Shaanxi, 710048, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, Shaanxi, 710048, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056121087","display_name":"Peilin Jia","orcid":"https://orcid.org/0000-0003-4523-4153"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peilin Jia","raw_affiliation_strings":["Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033317672","display_name":"Saurav Mallik","orcid":"https://orcid.org/0000-0003-4107-6784"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saurav Mallik","raw_affiliation_strings":["Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010752811","display_name":"Rong Fei","orcid":"https://orcid.org/0000-0003-1892-8192"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Fei","raw_affiliation_strings":["Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, Shaanxi, 710048, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, Shaanxi, 710048, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040865500","display_name":"Hiroki Yoshioka","orcid":"https://orcid.org/0000-0002-0977-434X"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hiroki Yoshioka","raw_affiliation_strings":["Center for Craniofacial Research, University of Texas Health Science Center at Houston, Houston, TX 77054, USA","Department of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77054, USA"],"raw_orcid":"https://orcid.org/0000-0002-0977-434X","affiliations":[{"raw_affiliation_string":"Center for Craniofacial Research, University of Texas Health Science Center at Houston, Houston, TX 77054, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77054, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036177715","display_name":"Akiko Suzuki","orcid":"https://orcid.org/0000-0003-3163-8093"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Akiko Suzuki","raw_affiliation_strings":["Center for Craniofacial Research, University of Texas Health Science Center at Houston, Houston, TX 77054, USA","Department of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77054, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Craniofacial Research, University of Texas Health Science Center at Houston, Houston, TX 77054, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77054, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049640606","display_name":"Junichi Iwata","orcid":"https://orcid.org/0000-0003-3975-6836"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junichi Iwata","raw_affiliation_strings":["Center for Craniofacial Research, University of Texas Health Science Center at Houston, Houston, TX 77054, USA","Department of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77054, USA","MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Craniofacial Research, University of Texas Health Science Center at Houston, Houston, TX 77054, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX 77054, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460","https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006688612","display_name":"Zhongming Zhao","orcid":"https://orcid.org/0000-0002-3477-0914"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhongming Zhao","raw_affiliation_strings":["Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37203, USA","MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX 77030, USA"],"raw_orcid":"https://orcid.org/0000-0002-3477-0914","affiliations":[{"raw_affiliation_string":"Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37203, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460","https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006688612"],"corresponding_institution_ids":["https://openalex.org/I1343551460","https://openalex.org/I901861585","https://openalex.org/I919571938"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.0236,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.94133842,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"21","issue":"4","first_page":"1465","last_page":"1478"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11374","display_name":"Cleft Lip and Palate Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11374","display_name":"Cleft Lip and Palate Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11679","display_name":"Craniofacial Disorders and Treatments","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12716","display_name":"Congenital Anomalies and Fetal Surgery","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.835279107093811},{"id":"https://openalex.org/keywords/pdgfra","display_name":"PDGFRA","score":0.7336095571517944},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7139892578125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6053229570388794},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6037744283676147},{"id":"https://openalex.org/keywords/fgf9","display_name":"FGF9","score":0.5212339162826538},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.521047055721283},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4822271764278412},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45021679997444153},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.43860554695129395},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3606621026992798},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3351944088935852},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.27205419540405273}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.835279107093811},{"id":"https://openalex.org/C37307934","wikidata":"https://www.wikidata.org/wiki/Q18030422","display_name":"PDGFRA","level":4,"score":0.7336095571517944},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7139892578125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6053229570388794},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6037744283676147},{"id":"https://openalex.org/C77390185","wikidata":"https://www.wikidata.org/wiki/Q17927898","display_name":"FGF9","level":4,"score":0.5212339162826538},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.521047055721283},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4822271764278412},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45021679997444153},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.43860554695129395},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3606621026992798},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3351944088935852},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.27205419540405273},{"id":"https://openalex.org/C16930146","wikidata":"https://www.wikidata.org/wiki/Q4381253","display_name":"Stromal cell","level":2,"score":0.0},{"id":"https://openalex.org/C2775922572","wikidata":"https://www.wikidata.org/wiki/Q83567","display_name":"GiST","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002972","descriptor_name":"Cleft Palate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002972","descriptor_name":"Cleft Palate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002972","descriptor_name":"Cleft Palate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002972","descriptor_name":"Cleft Palate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002972","descriptor_name":"Cleft Palate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbz082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz082","pdf_url":"https://academic.oup.com/bib/article-pdf/21/4/1465/33584658/bbz082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31589286","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31589286","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthdb_docs-1077","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthdb_docs/73","pdf_url":null,"source":{"id":"https://openalex.org/S4306401994","display_name":"DigtalCommons @ Texas Medical Center Library (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I867280407","host_organization_name":"The University of Texas Southwestern Medical Center","host_organization_lineage":["https://openalex.org/I867280407"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7412957","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7412957","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbz082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz082","pdf_url":"https://academic.oup.com/bib/article-pdf/21/4/1465/33584658/bbz082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G122955658","display_name":null,"funder_award_id":"R03 DE027393","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1664258250","display_name":null,"funder_award_id":"R03DE028340","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G174454136","display_name":null,"funder_award_id":"R01LM012806","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2614292847","display_name":null,"funder_award_id":"R03 DE027711","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G4492871446","display_name":null,"funder_award_id":"R01DE026767","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4779859109","display_name":null,"funder_award_id":"R03DE026509","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4857218689","display_name":null,"funder_award_id":"R03 DE026208","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G5412180486","display_name":null,"funder_award_id":"R03DE026208","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5651236485","display_name":null,"funder_award_id":"R01 LM012806","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5826653210","display_name":null,"funder_award_id":"R03DE028103","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6036782675","display_name":null,"funder_award_id":"R03DE027711","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6793973855","display_name":null,"funder_award_id":"R03 DE026509","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G6968613779","display_name":null,"funder_award_id":"R01 DE026767","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G795940769","display_name":null,"funder_award_id":"R03 DE028103","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G8217335533","display_name":null,"funder_award_id":"R03 DE028340","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G8509071731","display_name":null,"funder_award_id":"R03 DE027393","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2988020351.pdf","grobid_xml":"https://content.openalex.org/works/W2988020351.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1967824064","https://openalex.org/W1970976746","https://openalex.org/W1978228345","https://openalex.org/W1985049886","https://openalex.org/W1986819584","https://openalex.org/W1998767819","https://openalex.org/W2000860171","https://openalex.org/W2002086531","https://openalex.org/W2002232630","https://openalex.org/W2003048639","https://openalex.org/W2004193381","https://openalex.org/W2018234708","https://openalex.org/W2024791049","https://openalex.org/W2031092448","https://openalex.org/W2033169664","https://openalex.org/W2033595939","https://openalex.org/W2034299335","https://openalex.org/W2035782337","https://openalex.org/W2040191060","https://openalex.org/W2045362835","https://openalex.org/W2046437105","https://openalex.org/W2053510513","https://openalex.org/W2057983634","https://openalex.org/W2070250354","https://openalex.org/W2074040064","https://openalex.org/W2077327925","https://openalex.org/W2077879660","https://openalex.org/W2083381199","https://openalex.org/W2088287802","https://openalex.org/W2088390270","https://openalex.org/W2092501057","https://openalex.org/W2096525273","https://openalex.org/W2096529831","https://openalex.org/W2098619740","https://openalex.org/W2103912979","https://openalex.org/W2110065044","https://openalex.org/W2113198452","https://openalex.org/W2115629296","https://openalex.org/W2124166542","https://openalex.org/W2127704829","https://openalex.org/W2128818253","https://openalex.org/W2135030836","https://openalex.org/W2140952049","https://openalex.org/W2141541691","https://openalex.org/W2148705069","https://openalex.org/W2149785901","https://openalex.org/W2156159264","https://openalex.org/W2156483545","https://openalex.org/W2158217645","https://openalex.org/W2167668539","https://openalex.org/W2168348494","https://openalex.org/W2174734928","https://openalex.org/W2215427915","https://openalex.org/W2239886294","https://openalex.org/W2292416504","https://openalex.org/W2408997964","https://openalex.org/W2508023007","https://openalex.org/W2554322148","https://openalex.org/W2590327141","https://openalex.org/W2601507423","https://openalex.org/W2611696724","https://openalex.org/W2613317440","https://openalex.org/W2732141149","https://openalex.org/W2740099763","https://openalex.org/W2752065278","https://openalex.org/W2787788280","https://openalex.org/W2790610929","https://openalex.org/W2912019363","https://openalex.org/W2953642677","https://openalex.org/W4239634997","https://openalex.org/W6725367171","https://openalex.org/W6922179266"],"related_works":["https://openalex.org/W2010571965","https://openalex.org/W2002709996","https://openalex.org/W3128451840","https://openalex.org/W4387092964","https://openalex.org/W2103471012","https://openalex.org/W2966064480","https://openalex.org/W2115810854","https://openalex.org/W2380236774","https://openalex.org/W2277277196","https://openalex.org/W2043274041"],"abstract_inverted_index":{"Cleft":[0],"palate":[1,135,184,193],"(CP)":[2],"is":[3,15,203],"the":[4,27,40,123,156,175],"second":[5],"most":[6],"common":[7],"congenital":[8],"birth":[9],"defect.":[10],"The":[11,117,137],"etiology":[12],"of":[13,19,119,139,158,177],"CP":[14,74],"complicated,":[16],"with":[17,71,126],"involvement":[18],"various":[20],"genetic":[21],"and":[22,46,57,69,77,82,91,98,108,115,133,166,179,186,188,210,215],"environmental":[23],"factors.":[24],"To":[25],"investigate":[26],"gene":[28],"regulatory":[29,35,42,58,95,200,211],"mechanisms,":[30],"we":[31,50,79],"designed":[32],"a":[33],"powerful":[34],"analytical":[36],"approach":[37,202],"to":[38,62],"identify":[39],"conserved":[41,198],"networks":[43,87],"in":[44,73,75,112,130,181,190,205,213],"humans":[45,76,90,114],"mice,":[47,78],"from":[48],"which":[49,121],"identified":[51],"critical":[52],"microRNAs":[53],"(miRNAs),":[54],"target":[55,161],"genes":[56,68,162],"motifs":[59],"(miRNA-TF-gene)":[60],"related":[61],"CP.":[63,217],"Using":[64],"our":[65,197],"manually":[66],"curated":[67],"miRNAs":[70,100],"evidence":[72],"constructed":[80],"miRNA":[81],"transcription":[83],"factor":[84],"(TF)":[85],"co-regulation":[86],"for":[88],"both":[89,113,131],"mice.":[92,116],"A":[93],"consensus":[94,207],"loop":[96],"(miR17/miR20a-FOXE1-PDGFRA)":[97],"eight":[99],"(miR-140,":[101],"miR-17,":[102],"miR-18a,":[103],"miR-19a,":[104],"miR-19b,":[105],"miR-20a,":[106],"miR-451a":[107],"miR-92a)":[109],"were":[110],"discovered":[111],"role":[118],"miR-140,":[120],"had":[122],"strongest":[124],"association":[125],"CP,":[127],"was":[128],"investigated":[129],"human":[132,183,214],"mouse":[134,192,216],"cells.":[136,194],"overexpression":[138,153,173],"miR-140-5p,":[140],"but":[141],"not":[142],"miR-140-3p,":[143],"significantly":[144],"inhibited":[145],"cell":[146],"proliferation.":[147],"We":[148],"further":[149],"examined":[150],"whether":[151],"miR-140":[152],"could":[154],"suppress":[155],"expression":[157,176],"its":[159],"predicted":[160],"(BMP2,":[163],"FGF9,":[164],"PAX9":[165],"PDGFRA).":[167],"Our":[168],"results":[169],"indicated":[170],"that":[171],"miR-140-5p":[172],"suppressed":[174],"BMP2":[178],"FGF9":[180],"cultured":[182,191],"cells":[185],"Fgf9":[187],"Pdgfra":[189],"In":[195],"summary,":[196],"miRNA-TF-gene":[199],"network":[201],"effective":[204],"detecting":[206],"miRNAs,":[208],"motifs,":[209],"mechanisms":[212]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
