{"id":"https://openalex.org/W2997692303","doi":"https://doi.org/10.1093/bib/bbz065","title":"Data-driven rational biosynthesis design: from molecules to cell factories","display_name":"Data-driven rational biosynthesis design: from molecules to cell factories","publication_year":2019,"publication_date":"2019-05-10","ids":{"openalex":"https://openalex.org/W2997692303","doi":"https://doi.org/10.1093/bib/bbz065","mag":"2997692303","pmid":"https://pubmed.ncbi.nlm.nih.gov/31243440"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz065","pdf_url":"https://academic.oup.com/bib/article-pdf/21/4/1238/33584540/bbz065.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/21/4/1238/33584540/bbz065.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015142571","display_name":"Chen Fu","orcid":"https://orcid.org/0000-0002-0397-7656"},"institutions":[{"id":"https://openalex.org/I132369690","display_name":"Tianjin University of Science and Technology","ror":"https://ror.org/018rbtf37","country_code":"CN","type":"education","lineage":["https://openalex.org/I132369690"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fu Chen","raw_affiliation_strings":["CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","College of Biotechnology, Tianjin University of Science and Technology, Tianjin, People\u2019s Republic of China","Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"College of Biotechnology, Tianjin University of Science and Technology, Tianjin, People\u2019s Republic of China","institution_ids":["https://openalex.org/I132369690"]},{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040288402","display_name":"Le Yuan","orcid":"https://orcid.org/0000-0003-3317-9011"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Yuan","raw_affiliation_strings":["Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China","University of Chinese Academy of Sciences, Beijing, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073275197","display_name":"Shaozhen Ding","orcid":"https://orcid.org/0000-0002-5581-8403"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaozhen Ding","raw_affiliation_strings":["CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072835438","display_name":"Yu Tian","orcid":"https://orcid.org/0000-0001-8079-6149"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Tian","raw_affiliation_strings":["Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China","University of Chinese Academy of Sciences, Beijing, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210139473","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101770220","display_name":"Qian\u2010Nan Hu","orcid":"https://orcid.org/0000-0001-5213-472X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qian-Nan Hu","raw_affiliation_strings":["CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101770220"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013","https://openalex.org/I4210106477"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.8548,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.73684733,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"21","issue":"4","first_page":"1238","last_page":"1248"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chassis","display_name":"Chassis","score":0.7673457860946655},{"id":"https://openalex.org/keywords/rational-design","display_name":"Rational design","score":0.740203857421875},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6189153790473938},{"id":"https://openalex.org/keywords/factory","display_name":"Factory (object-oriented programming)","score":0.5381087064743042},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.5198274254798889},{"id":"https://openalex.org/keywords/metabolic-engineering","display_name":"Metabolic engineering","score":0.4509527087211609},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4456357955932617},{"id":"https://openalex.org/keywords/drug-design","display_name":"Drug design","score":0.4414599537849426},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4393211901187897},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.4261058568954468},{"id":"https://openalex.org/keywords/biosynthesis","display_name":"Biosynthesis","score":0.417349636554718},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.41608327627182007},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2535950541496277},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19290894269943237},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1878323256969452},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18319883942604065},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.17184138298034668},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.16272056102752686},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14013215899467468}],"concepts":[{"id":"https://openalex.org/C512993513","wikidata":"https://www.wikidata.org/wiki/Q1068107","display_name":"Chassis","level":2,"score":0.7673457860946655},{"id":"https://openalex.org/C53105671","wikidata":"https://www.wikidata.org/wiki/Q14777816","display_name":"Rational design","level":2,"score":0.740203857421875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6189153790473938},{"id":"https://openalex.org/C40149104","wikidata":"https://www.wikidata.org/wiki/Q5620977","display_name":"Factory (object-oriented programming)","level":2,"score":0.5381087064743042},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.5198274254798889},{"id":"https://openalex.org/C6350086","wikidata":"https://www.wikidata.org/wiki/Q6822347","display_name":"Metabolic engineering","level":3,"score":0.4509527087211609},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4456357955932617},{"id":"https://openalex.org/C192071366","wikidata":"https://www.wikidata.org/wiki/Q2991682","display_name":"Drug design","level":2,"score":0.4414599537849426},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4393211901187897},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.4261058568954468},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.417349636554718},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.41608327627182007},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2535950541496277},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19290894269943237},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1878323256969452},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18319883942604065},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17184138298034668},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.16272056102752686},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14013215899467468},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbz065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz065","pdf_url":"https://academic.oup.com/bib/article-pdf/21/4/1238/33584540/bbz065.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31243440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31243440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbz065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbz065","pdf_url":"https://academic.oup.com/bib/article-pdf/21/4/1238/33584540/bbz065.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3192228573","display_name":null,"funder_award_id":"2017YFC1601702","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3541897177","display_name":null,"funder_award_id":"153D31KYSB20170121","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G3732429493","display_name":null,"funder_award_id":"QYZDB-SSW-SMC012","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G4834698102","display_name":null,"funder_award_id":"QYZDB-SSW-SMC012","funder_id":"https://openalex.org/F4320309526","funder_display_name":"Society of Thoracic Surgeons"},{"id":"https://openalex.org/G8953631283","display_name":"\u57fa\u4e8e\u751f\u5316\u53cd\u5e94\u6307\u7eb9\u7279\u5f81\u7684\u9176\u6a21\u578b\u6784\u5efa","funder_award_id":"31570092","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309526","display_name":"Society of Thoracic Surgeons","ror":"https://ror.org/044b6j563"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320323993","display_name":"Natural Science Foundation of Tianjin City","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2997692303.pdf","grobid_xml":"https://content.openalex.org/works/W2997692303.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W837192254","https://openalex.org/W1202680985","https://openalex.org/W1934481644","https://openalex.org/W1964232618","https://openalex.org/W1969983517","https://openalex.org/W1971439989","https://openalex.org/W1987607959","https://openalex.org/W1989263028","https://openalex.org/W1990226486","https://openalex.org/W1996830618","https://openalex.org/W1997045431","https://openalex.org/W1997996256","https://openalex.org/W2006137883","https://openalex.org/W2009257824","https://openalex.org/W2015557312","https://openalex.org/W2016667239","https://openalex.org/W2020104452","https://openalex.org/W2022186026","https://openalex.org/W2029943478","https://openalex.org/W2033377040","https://openalex.org/W2035753075","https://openalex.org/W2041242124","https://openalex.org/W2050888933","https://openalex.org/W2060184615","https://openalex.org/W2062941476","https://openalex.org/W2067668784","https://openalex.org/W2068526246","https://openalex.org/W2068855150","https://openalex.org/W2070484508","https://openalex.org/W2078355959","https://openalex.org/W2081930221","https://openalex.org/W2085993965","https://openalex.org/W2089121522","https://openalex.org/W2100818174","https://openalex.org/W2102164505","https://openalex.org/W2102440675","https://openalex.org/W2103612757","https://openalex.org/W2104619491","https://openalex.org/W2108723491","https://openalex.org/W2109880272","https://openalex.org/W2113328169","https://openalex.org/W2113983551","https://openalex.org/W2128601422","https://openalex.org/W2129860041","https://openalex.org/W2130364940","https://openalex.org/W2131504364","https://openalex.org/W2136174202","https://openalex.org/W2145218967","https://openalex.org/W2151930053","https://openalex.org/W2152776677","https://openalex.org/W2153921000","https://openalex.org/W2154139219","https://openalex.org/W2158784643","https://openalex.org/W2160253662","https://openalex.org/W2163910672","https://openalex.org/W2168504993","https://openalex.org/W2170146596","https://openalex.org/W2171421143","https://openalex.org/W2177317049","https://openalex.org/W2181121096","https://openalex.org/W2202347610","https://openalex.org/W2224056471","https://openalex.org/W2229450847","https://openalex.org/W2255717496","https://openalex.org/W2290999697","https://openalex.org/W2293809279","https://openalex.org/W2321143980","https://openalex.org/W2328214874","https://openalex.org/W2344676116","https://openalex.org/W2412308152","https://openalex.org/W2519903392","https://openalex.org/W2543238710","https://openalex.org/W2559588208","https://openalex.org/W2608582089","https://openalex.org/W2609551972","https://openalex.org/W2620998958","https://openalex.org/W2754259948","https://openalex.org/W2759754729","https://openalex.org/W2767088268","https://openalex.org/W2775240084","https://openalex.org/W2783587640","https://openalex.org/W2793300293","https://openalex.org/W2794879083","https://openalex.org/W2895689867","https://openalex.org/W2896002881","https://openalex.org/W2897524950","https://openalex.org/W2898210859","https://openalex.org/W2899903294","https://openalex.org/W2917202476","https://openalex.org/W2918063357","https://openalex.org/W2920645452","https://openalex.org/W2949078105","https://openalex.org/W2949274932","https://openalex.org/W4210702584","https://openalex.org/W4231551535","https://openalex.org/W6667075989","https://openalex.org/W6689111526","https://openalex.org/W6726564449"],"related_works":["https://openalex.org/W4212990602","https://openalex.org/W4212982835","https://openalex.org/W2126646394","https://openalex.org/W3045831679","https://openalex.org/W3047447888","https://openalex.org/W2053717739","https://openalex.org/W2626617466","https://openalex.org/W1999457307","https://openalex.org/W2059128096","https://openalex.org/W2032408161"],"abstract_inverted_index":{"A":[0],"proliferation":[1],"of":[2,27,30,56,70,76,99,109,114,130,162],"chemical,":[3],"reaction":[4,93],"and":[5,11,94,106,120,125,158],"enzyme":[6],"databases,":[7],"new":[8],"computational":[9],"methods":[10,124],"software":[12],"tools":[13,164],"for":[14,117],"data-driven":[15,38,77,153],"rational":[16,39,154],"biosynthesis":[17,40,155],"design":[18,41,80,139,156],"have":[19],"emerged":[20],"in":[21,34,165],"recent":[22],"years.":[23],"With":[24],"the":[25,28,35,52,67,141,145],"coming":[26],"era":[29],"big":[31],"data,":[32],"particularly":[33],"bio-medical":[36],"field,":[37],"could":[42,81,136],"potentially":[43],"be":[44,82],"useful":[45],"to":[46,59,144],"construct":[47],"target-oriented":[48],"chassis":[49,57,146],"organisms.":[50],"Engineering":[51],"complicated":[53],"metabolic":[54,92,118],"systems":[55],"organisms":[58],"biosynthesize":[60],"target":[61,88],"molecules":[62],"from":[63,140],"inexpensive":[64],"biomass":[65],"is":[66],"main":[68],"goal":[69],"cell":[71,78,133],"factory":[72,79,134],"design.":[73],"The":[74,128],"process":[75],"divided":[83],"into":[84],"several":[85],"parts:":[86],"(1)":[87],"molecule":[89,142],"selection;":[90],"(2)":[91],"pathway":[95],"design;":[96],"(3)":[97],"prediction":[98],"novel":[100],"enzymes":[101],"based":[102],"on":[103],"protein":[104],"domain":[105],"structure":[107],"transformation":[108],"biosynthetic":[110],"reactions;":[111],"(4)":[112],"construction":[113,129],"large-scale":[115],"DNA":[116,122],"pathways;":[119],"(5)":[121],"assembly":[123],"visualization":[126],"tools.":[127],"a":[131],"one-stop":[132],"system":[135],"achieve":[137],"automated":[138],"level":[143],"level.":[147],"In":[148],"this":[149],"article,":[150],"we":[151],"outline":[152],"steps":[157],"provide":[159],"an":[160],"overview":[161],"related":[163],"individual":[166],"steps.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
