{"id":"https://openalex.org/W2923863751","doi":"https://doi.org/10.1093/bib/bbz030","title":"Shaping the nebulous enhancer in the era of high-throughput assays and genome editing","display_name":"Shaping the nebulous enhancer in the era of high-throughput assays and genome editing","publication_year":2019,"publication_date":"2019-02-27","ids":{"openalex":"https://openalex.org/W2923863751","doi":"https://doi.org/10.1093/bib/bbz030","mag":"2923863751","pmid":"https://pubmed.ncbi.nlm.nih.gov/30895290"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz030","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz030","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027306727","display_name":"Edwin Yu-Kiu Ho","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Edwin Yu-Kiu Ho","raw_affiliation_strings":["Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043534100","display_name":"Qin Cao","orcid":"https://orcid.org/0000-0002-3106-562X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qin Cao","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087035301","display_name":"Mengting Gu","orcid":"https://orcid.org/0000-0003-1684-0146"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengting Gu","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034657375","display_name":"Ricky Wai-Lun Chan","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ricky Wai-Lun Chan","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100638546","display_name":"Qiong Wu","orcid":"https://orcid.org/0000-0003-3305-6652"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiong Wu","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong","School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["Department of Computer Science, Yale University, New Haven, Connecticut, USA","Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA","Program in Computational Biology and Bioinformatics"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yale University, New Haven, Connecticut, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066417693","display_name":"Kevin Y. Yip","orcid":"https://orcid.org/0000-0001-5516-9944"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210118286","display_name":"Hong Kong Design Centre","ror":"https://ror.org/02hbtf857","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210118286"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Kevin Y Yip","raw_affiliation_strings":["CUHK-BGI Innovation Institute of Trans-omics","Department of Biomedical Engineering","Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong","Hong Kong Bioinformatics Centre","Hong Kong Institute of Diabetes and Obesity, The Chinese University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"CUHK-BGI Innovation Institute of Trans-omics","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Hong Kong Bioinformatics Centre","institution_ids":["https://openalex.org/I4210118286"]},{"raw_affiliation_string":"Hong Kong Institute of Diabetes and Obesity, The Chinese University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066417693"],"corresponding_institution_ids":["https://openalex.org/I177725633","https://openalex.org/I4210118286","https://openalex.org/I889458895"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.4262,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60834704,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"21","issue":"3","first_page":"836","last_page":"850"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.8490477800369263},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6054286360740662},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5562971830368042},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.47587552666664124},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45817846059799194},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43989256024360657},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41691720485687256},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3926561176776886},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2500755786895752},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17810580134391785},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.06414705514907837}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.8490477800369263},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6054286360740662},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5562971830368042},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.47587552666664124},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45817846059799194},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43989256024360657},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41691720485687256},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3926561176776886},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2500755786895752},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17810580134391785},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.06414705514907837},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbz030","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz030","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30895290","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30895290","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":178,"referenced_works":["https://openalex.org/W179179415","https://openalex.org/W567852514","https://openalex.org/W627185836","https://openalex.org/W655820313","https://openalex.org/W1501807279","https://openalex.org/W1562792231","https://openalex.org/W1605145036","https://openalex.org/W1776547251","https://openalex.org/W1779614964","https://openalex.org/W1855348513","https://openalex.org/W1896049422","https://openalex.org/W1908115768","https://openalex.org/W1964672978","https://openalex.org/W1965366115","https://openalex.org/W1965425724","https://openalex.org/W1969466735","https://openalex.org/W1971578941","https://openalex.org/W1972013835","https://openalex.org/W1972478892","https://openalex.org/W1973062929","https://openalex.org/W1973796285","https://openalex.org/W1974223852","https://openalex.org/W1975456035","https://openalex.org/W1976117323","https://openalex.org/W1976148686","https://openalex.org/W1977855308","https://openalex.org/W1978901723","https://openalex.org/W1978902427","https://openalex.org/W1979594866","https://openalex.org/W1982955024","https://openalex.org/W1983198281","https://openalex.org/W1984479378","https://openalex.org/W1985621639","https://openalex.org/W1986223165","https://openalex.org/W1986865417","https://openalex.org/W1988760117","https://openalex.org/W1989004527","https://openalex.org/W1991740019","https://openalex.org/W1991754371","https://openalex.org/W1992213480","https://openalex.org/W1996060670","https://openalex.org/W1999647874","https://openalex.org/W2000274486","https://openalex.org/W2004966039","https://openalex.org/W2006824094","https://openalex.org/W2007694108","https://openalex.org/W2008273301","https://openalex.org/W2010789111","https://openalex.org/W2011463791","https://openalex.org/W2012741191","https://openalex.org/W2014787267","https://openalex.org/W2014966792","https://openalex.org/W2015845481","https://openalex.org/W2016015848","https://openalex.org/W2017526981","https://openalex.org/W2018198956","https://openalex.org/W2019590714","https://openalex.org/W2021373833","https://openalex.org/W2021678907","https://openalex.org/W2021828984","https://openalex.org/W2023386301","https://openalex.org/W2026770360","https://openalex.org/W2028163659","https://openalex.org/W2028789792","https://openalex.org/W2029626819","https://openalex.org/W2033201031","https://openalex.org/W2039579801","https://openalex.org/W2040544622","https://openalex.org/W2050090238","https://openalex.org/W2055790209","https://openalex.org/W2057172887","https://openalex.org/W2057993471","https://openalex.org/W2061650108","https://openalex.org/W2062408930","https://openalex.org/W2063815548","https://openalex.org/W2065006553","https://openalex.org/W2066783444","https://openalex.org/W2067024032","https://openalex.org/W2067956561","https://openalex.org/W2070021921","https://openalex.org/W2074365347","https://openalex.org/W2076154138","https://openalex.org/W2077874719","https://openalex.org/W2084390552","https://openalex.org/W2085146326","https://openalex.org/W2086117054","https://openalex.org/W2088017477","https://openalex.org/W2088544963","https://openalex.org/W2090037139","https://openalex.org/W2091533196","https://openalex.org/W2096465161","https://openalex.org/W2098573193","https://openalex.org/W2099281533","https://openalex.org/W2100847260","https://openalex.org/W2102532874","https://openalex.org/W2102689239","https://openalex.org/W2107992854","https://openalex.org/W2112257928","https://openalex.org/W2113945915","https://openalex.org/W2114930475","https://openalex.org/W2115948084","https://openalex.org/W2116584178","https://openalex.org/W2117396697","https://openalex.org/W2117486996","https://openalex.org/W2117688129","https://openalex.org/W2118532317","https://openalex.org/W2121568188","https://openalex.org/W2123404806","https://openalex.org/W2123564569","https://openalex.org/W2124343649","https://openalex.org/W2125026226","https://openalex.org/W2126243836","https://openalex.org/W2129381471","https://openalex.org/W2131186458","https://openalex.org/W2133484520","https://openalex.org/W2133727333","https://openalex.org/W2134033103","https://openalex.org/W2137167381","https://openalex.org/W2137796520","https://openalex.org/W2141831115","https://openalex.org/W2145144631","https://openalex.org/W2152751895","https://openalex.org/W2154746182","https://openalex.org/W2155968127","https://openalex.org/W2157121418","https://openalex.org/W2160051211","https://openalex.org/W2162641630","https://openalex.org/W2166770943","https://openalex.org/W2167016522","https://openalex.org/W2168191908","https://openalex.org/W2168602111","https://openalex.org/W2169710039","https://openalex.org/W2170696599","https://openalex.org/W2173155483","https://openalex.org/W2174466696","https://openalex.org/W2183523328","https://openalex.org/W2186478995","https://openalex.org/W2194390873","https://openalex.org/W2194804006","https://openalex.org/W2194906097","https://openalex.org/W2195190137","https://openalex.org/W2196188960","https://openalex.org/W2209883607","https://openalex.org/W2217108432","https://openalex.org/W2224894504","https://openalex.org/W2230326311","https://openalex.org/W2239511084","https://openalex.org/W2254864826","https://openalex.org/W2259938310","https://openalex.org/W2270544154","https://openalex.org/W2289024668","https://openalex.org/W2295037017","https://openalex.org/W2299614563","https://openalex.org/W2308616703","https://openalex.org/W2333286569","https://openalex.org/W2342153705","https://openalex.org/W2385735394","https://openalex.org/W2424483111","https://openalex.org/W2431731821","https://openalex.org/W2478994808","https://openalex.org/W2523285811","https://openalex.org/W2523591699","https://openalex.org/W2526877120","https://openalex.org/W2528598248","https://openalex.org/W2529467427","https://openalex.org/W2553600202","https://openalex.org/W2553838260","https://openalex.org/W2569675702","https://openalex.org/W2594764564","https://openalex.org/W2606434976","https://openalex.org/W2606796272","https://openalex.org/W2621774891","https://openalex.org/W2752211734","https://openalex.org/W2769418303","https://openalex.org/W2796366554","https://openalex.org/W2951901532","https://openalex.org/W2968998400","https://openalex.org/W4235854794"],"related_works":["https://openalex.org/W2113330652","https://openalex.org/W2061914098","https://openalex.org/W4393004084","https://openalex.org/W4309683845","https://openalex.org/W2118646732","https://openalex.org/W4387565139","https://openalex.org/W4389440207","https://openalex.org/W2972483091","https://openalex.org/W4378781551","https://openalex.org/W2917637208"],"abstract_inverted_index":{"Since":[0],"the":[1,17,22,33,79,99,120],"1st":[2],"discovery":[3,37],"of":[4,24,40,46,73,81,93],"transcriptional":[5],"enhancers":[6,42,82],"in":[7,16,64,108],"1981,":[8],"their":[9],"textbook":[10],"definition":[11,58,100],"has":[12,51,59],"remained":[13],"largely":[14],"unchanged":[15],"past":[18],"37":[19],"years.":[20],"With":[21],"emergence":[23],"high-throughput":[25],"assays":[26],"and":[27,38,77,111,123],"genome":[28],"editing,":[29],"which":[30,103],"are":[31],"switching":[32],"paradigm":[34],"from":[35],"bottom-up":[36],"testing":[39],"individual":[41],"to":[43,106],"top-down":[44],"profiling":[45],"enhancer":[47],"activities":[48],"genome-wide,":[49],"it":[50],"become":[52],"increasingly":[53],"evidenced":[54],"that":[55,89],"this":[56],"classical":[57],"left":[60],"substantial":[61],"gray":[62],"areas":[63],"different":[65],"aspects.":[66],"Here":[67],"we":[68,118],"survey":[69],"a":[70,90],"representative":[71],"set":[72],"recent":[74],"research":[75],"articles":[76],"report":[78],"definitions":[80,94],"they":[83],"have":[84],"adopted.":[85],"The":[86],"results":[87],"reveal":[88],"wide":[91],"spectrum":[92],"is":[95],"used":[96],"usually":[97],"without":[98],"stated":[101],"explicitly,":[102],"could":[104],"lead":[105],"difficulties":[107],"data":[109],"interpretation":[110],"downstream":[112],"analyses.":[113],"Based":[114],"on":[115],"these":[116],"findings,":[117],"discuss":[119],"practical":[121],"implications":[122],"suggestions":[124],"for":[125],"future":[126],"studies.":[127]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
