{"id":"https://openalex.org/W2911380762","doi":"https://doi.org/10.1093/bib/bbz003","title":"Cancer Target Gene Screening: a web application for breast cancer target gene screening using multi-omics data analysis","display_name":"Cancer Target Gene Screening: a web application for breast cancer target gene screening using multi-omics data analysis","publication_year":2019,"publication_date":"2019-01-05","ids":{"openalex":"https://openalex.org/W2911380762","doi":"https://doi.org/10.1093/bib/bbz003","mag":"2911380762","pmid":"https://pubmed.ncbi.nlm.nih.gov/30698638"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbz003","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz003","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110577289","display_name":"Hyung-Yong Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyung-Yong Kim","raw_affiliation_strings":["Department of Pathology, College of Medicine, Hanyang University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, College of Medicine, Hanyang University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024020131","display_name":"Hee\u2010Joo Choi","orcid":"https://orcid.org/0000-0001-6432-8193"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hee-Joo Choi","raw_affiliation_strings":["Department of Pathology, College of Medicine, Hanyang University, Seoul, Republic of Korea","Institute for Bioengineering and Biopharmaceutical Research, Hanyang University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, College of Medicine, Hanyang University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]},{"raw_affiliation_string":"Institute for Bioengineering and Biopharmaceutical Research, Hanyang University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101580125","display_name":"Jeong\u2010Yeon Lee","orcid":"https://orcid.org/0000-0003-1298-7466"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jeong-Yeon Lee","raw_affiliation_strings":["Department of Medicine, College of Medicine, Hanyang University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, College of Medicine, Hanyang University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001681907","display_name":"Gu Kong","orcid":"https://orcid.org/0000-0001-9206-8210"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Gu Kong","raw_affiliation_strings":["Department of Pathology, College of Medicine, Hanyang University, Seoul, Republic of Korea","Institute for Bioengineering and Biopharmaceutical Research, Hanyang University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, College of Medicine, Hanyang University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]},{"raw_affiliation_string":"Institute for Bioengineering and Biopharmaceutical Research, Hanyang University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001681907","https://openalex.org/A5101580125"],"corresponding_institution_ids":["https://openalex.org/I4575257"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8524,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.71730436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"21","issue":"2","first_page":"663","last_page":"675"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6491352319717407},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.500502347946167},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41361895203590393},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.41272708773612976},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40294700860977173},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36401885747909546},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26210135221481323},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20645374059677124}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6491352319717407},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.500502347946167},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41361895203590393},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.41272708773612976},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40294700860977173},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36401885747909546},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26210135221481323},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20645374059677124}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbz003","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbz003","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30698638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30698638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G8784903860","display_name":null,"funder_award_id":"2015R1A2A1A10052578","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1526705543","https://openalex.org/W1908864745","https://openalex.org/W1965624042","https://openalex.org/W1969096316","https://openalex.org/W1977918192","https://openalex.org/W1987276771","https://openalex.org/W1993362565","https://openalex.org/W1995535201","https://openalex.org/W2005895632","https://openalex.org/W2026099579","https://openalex.org/W2037915750","https://openalex.org/W2048000549","https://openalex.org/W2063382533","https://openalex.org/W2066412407","https://openalex.org/W2077749987","https://openalex.org/W2085934079","https://openalex.org/W2096283457","https://openalex.org/W2096525273","https://openalex.org/W2097255042","https://openalex.org/W2106714771","https://openalex.org/W2114843025","https://openalex.org/W2118258530","https://openalex.org/W2128985829","https://openalex.org/W2130410032","https://openalex.org/W2131994307","https://openalex.org/W2132285133","https://openalex.org/W2134539328","https://openalex.org/W2142958935","https://openalex.org/W2150757282","https://openalex.org/W2157852151","https://openalex.org/W2165319922","https://openalex.org/W2344657883","https://openalex.org/W2375577403","https://openalex.org/W2403281697","https://openalex.org/W2461625475","https://openalex.org/W2474819803","https://openalex.org/W2523679195","https://openalex.org/W2528319239","https://openalex.org/W2546430816","https://openalex.org/W2598588612","https://openalex.org/W2611138580","https://openalex.org/W2740523213","https://openalex.org/W2750040635","https://openalex.org/W2751397524","https://openalex.org/W2775396371","https://openalex.org/W2782822491","https://openalex.org/W2784057214","https://openalex.org/W2787229753","https://openalex.org/W2788281782","https://openalex.org/W2801090470","https://openalex.org/W2898741519","https://openalex.org/W2950753203","https://openalex.org/W4211032970","https://openalex.org/W4243601081","https://openalex.org/W6712945147","https://openalex.org/W6755430184"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W4405112912","https://openalex.org/W2375584271","https://openalex.org/W1997105855","https://openalex.org/W4301030387","https://openalex.org/W2414286769","https://openalex.org/W2013223288","https://openalex.org/W2186113122","https://openalex.org/W1523310174","https://openalex.org/W3015743358"],"abstract_inverted_index":{"Breast":[0],"cancer":[1,43,169,180],"comprises":[2],"several":[3],"molecular":[4],"subtypes":[5],"with":[6,145],"distinct":[7],"clinical":[8,29,68,139,189],"features":[9,172],"and":[10,13,28,45,50,67,86,107,114,119,140,151],"treatment":[11],"responses,":[12],"a":[14,56,80,94,184],"substantial":[15],"portion":[16],"of":[17,25,41,70,89,97,105,111,116,120,125,133,138,158,161,167,178,191],"each":[18],"subtype":[19,186],"remains":[20],"incurable.":[21],"A":[22],"comprehensive":[23],"analysis":[24,88,157],"multi-omics":[26,90],"data":[27,91,163],"profiles":[30,113],"is":[31,196],"required":[32],"in":[33,64,164,175,183],"order":[34],"to":[35,46,62],"better":[36],"understand":[37],"the":[38,65,71,103,129,155,176,188],"biological":[39,141],"complexity":[40],"this":[42],"type":[44],"identify":[47],"new":[48],"prognostic":[49],"therapeutic":[51],"markers.":[52],"Thus,":[53],"there":[54],"arises":[55],"need":[57],"for":[58],"useful":[59],"analytical":[60],"tools":[61],"assist":[63],"investigation":[66,104],"management":[69],"disease.":[72],"We":[73],"developed":[74],"Cancer":[75],"Target":[76],"Gene":[77],"Screening":[78],"(CTGS),":[79],"web":[81],"application":[82],"that":[83],"provides":[84],"rapid":[85],"user-friendly":[87],"sets":[92],"from":[93],"large":[95],"number":[96,147],"primary":[98],"breast":[99,168,193],"tumors.":[100],"It":[101],"allows":[102],"genomic":[106],"epigenomic":[108],"aberrations,":[109],"evaluation":[110],"transcriptomic":[112],"performance":[115],"survival":[117],"analyses":[118],"bivariate":[121],"correlations":[122],"between":[123],"layers":[124],"omics":[126,162],"data.":[127],"Notably,":[128],"genome-wide":[130],"screening":[131],"function":[132],"CTGS":[134,195],"prioritizes":[135],"candidate":[136],"genes":[137,144,182],"significance":[142],"among":[143],"copy":[146],"alteration,":[148],"DNA":[149],"methylation":[150],"dysregulated":[152],"expression":[153],"by":[154],"integrative":[156],"different":[159],"types":[160],"customized":[165],"subgroups":[166],"patients.":[170],"These":[171],"may":[173],"help":[174],"identification":[177],"druggable":[179],"driver":[181],"specific":[185],"or":[187],"condition":[190],"human":[192],"cancer.":[194],"available":[197],"at":[198],"http://ctgs.biohackers.net.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-02-25T08:12:03.925757","created_date":"2025-10-10T00:00:00"}
