{"id":"https://openalex.org/W2913283787","doi":"https://doi.org/10.1093/bib/bby115","title":"Multilevel heterogeneous omics data integration with kernel fusion","display_name":"Multilevel heterogeneous omics data integration with kernel fusion","publication_year":2018,"publication_date":"2018-11-09","ids":{"openalex":"https://openalex.org/W2913283787","doi":"https://doi.org/10.1093/bib/bby115","mag":"2913283787","pmid":"https://pubmed.ncbi.nlm.nih.gov/30496340"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby115","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby115","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100612175","display_name":"Haitao Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I111381250","display_name":"Hebei Medical University","ror":"https://ror.org/04eymdx19","country_code":"CN","type":"education","lineage":["https://openalex.org/I111381250"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haitao Yang","raw_affiliation_strings":["Department of Epidemiology and Health Statistics, School of Public Health, and Hebei Province Key Laboratory of Environment and Human Health, Hebei Medical University, Shijiazhuang, PR China"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Health Statistics, School of Public Health, and Hebei Province Key Laboratory of Environment and Human Health, Hebei Medical University, Shijiazhuang, PR China","institution_ids":["https://openalex.org/I111381250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101689871","display_name":"Hongyan Cao","orcid":"https://orcid.org/0009-0004-0799-5546"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongyan Cao","raw_affiliation_strings":["Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, PR China"],"affiliations":[{"raw_affiliation_string":"Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, PR China","institution_ids":["https://openalex.org/I17721919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102003758","display_name":"Tao He","orcid":null},"institutions":[{"id":"https://openalex.org/I71838634","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121","country_code":"US","type":"education","lineage":["https://openalex.org/I71838634"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tao He","raw_affiliation_strings":["Department of Mathematics, San Francisco State University, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, San Francisco State University, San Francisco, CA, USA","institution_ids":["https://openalex.org/I71838634"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451016","display_name":"Tong Wang","orcid":"https://orcid.org/0000-0002-9403-7167"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong Wang","raw_affiliation_strings":["Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, PR China"],"affiliations":[{"raw_affiliation_string":"Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, PR China","institution_ids":["https://openalex.org/I17721919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087339898","display_name":"Yuehua Cui","orcid":"https://orcid.org/0000-0001-8099-1753"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]},{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yuehua Cui","raw_affiliation_strings":["Department of Statistics and Probability, Michigan State University, East Lansing, MI, USA","Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, PR China"],"affiliations":[{"raw_affiliation_string":"Department of Statistics and Probability, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, PR China","institution_ids":["https://openalex.org/I17721919"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087339898"],"corresponding_institution_ids":["https://openalex.org/I17721919","https://openalex.org/I87216513"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.0196,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.76699741,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"156","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.7066057920455933},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6471738815307617},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.566068172454834},{"id":"https://openalex.org/keywords/multiple-kernel-learning","display_name":"Multiple kernel learning","score":0.5290184020996094},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4967401623725891},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49118492007255554},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48737555742263794},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.4772874414920807},{"id":"https://openalex.org/keywords/sensor-fusion","display_name":"Sensor fusion","score":0.4166216552257538},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4130655527114868},{"id":"https://openalex.org/keywords/kernel-method","display_name":"Kernel method","score":0.40861088037490845},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3308519721031189},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21912166476249695},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15429437160491943},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1476021707057953}],"concepts":[{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.7066057920455933},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6471738815307617},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.566068172454834},{"id":"https://openalex.org/C2776879701","wikidata":"https://www.wikidata.org/wiki/Q25048660","display_name":"Multiple kernel learning","level":4,"score":0.5290184020996094},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4967401623725891},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49118492007255554},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48737555742263794},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.4772874414920807},{"id":"https://openalex.org/C33954974","wikidata":"https://www.wikidata.org/wiki/Q486494","display_name":"Sensor fusion","level":2,"score":0.4166216552257538},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4130655527114868},{"id":"https://openalex.org/C122280245","wikidata":"https://www.wikidata.org/wiki/Q620622","display_name":"Kernel method","level":3,"score":0.40861088037490845},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3308519721031189},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21912166476249695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15429437160491943},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1476021707057953},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bby115","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby115","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30496340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30496340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G3907658342","display_name":null,"funder_award_id":"81872715","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G779352478","display_name":null,"funder_award_id":"81872717","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8478310552","display_name":null,"funder_award_id":"ZD2018022","funder_id":"https://openalex.org/F4320324967","funder_display_name":"Department of Health of Hebei Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324967","display_name":"Department of Health of Hebei Province","ror":"https://ror.org/018zra666"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":83,"referenced_works":["https://openalex.org/W49513413","https://openalex.org/W264320815","https://openalex.org/W595233188","https://openalex.org/W1560724230","https://openalex.org/W1601337698","https://openalex.org/W1601740268","https://openalex.org/W1986964250","https://openalex.org/W2002748000","https://openalex.org/W2015596806","https://openalex.org/W2015776612","https://openalex.org/W2015870870","https://openalex.org/W2029538739","https://openalex.org/W2033244207","https://openalex.org/W2037438423","https://openalex.org/W2040972146","https://openalex.org/W2041491816","https://openalex.org/W2044772846","https://openalex.org/W2060166505","https://openalex.org/W2074465378","https://openalex.org/W2082573972","https://openalex.org/W2084649778","https://openalex.org/W2086626679","https://openalex.org/W2089306171","https://openalex.org/W2095463689","https://openalex.org/W2095692770","https://openalex.org/W2096283457","https://openalex.org/W2097453652","https://openalex.org/W2097939965","https://openalex.org/W2102596641","https://openalex.org/W2109553965","https://openalex.org/W2109743529","https://openalex.org/W2118563516","https://openalex.org/W2125500141","https://openalex.org/W2128245586","https://openalex.org/W2130854041","https://openalex.org/W2133297572","https://openalex.org/W2137557016","https://openalex.org/W2139269942","https://openalex.org/W2141199622","https://openalex.org/W2144902422","https://openalex.org/W2144911722","https://openalex.org/W2146512693","https://openalex.org/W2148603752","https://openalex.org/W2150780222","https://openalex.org/W2154164391","https://openalex.org/W2156909104","https://openalex.org/W2158449659","https://openalex.org/W2159427817","https://openalex.org/W2161444669","https://openalex.org/W2165093044","https://openalex.org/W2170602872","https://openalex.org/W2171015116","https://openalex.org/W2210004111","https://openalex.org/W2210259689","https://openalex.org/W2405680777","https://openalex.org/W2413008724","https://openalex.org/W2527974276","https://openalex.org/W2559655401","https://openalex.org/W2562162676","https://openalex.org/W2605800822","https://openalex.org/W2607662938","https://openalex.org/W2624701078","https://openalex.org/W3009922370","https://openalex.org/W3023540311","https://openalex.org/W3099582793","https://openalex.org/W3119662312","https://openalex.org/W3144619878","https://openalex.org/W3145013517","https://openalex.org/W3152020487","https://openalex.org/W4206509728","https://openalex.org/W4239944110","https://openalex.org/W4255056905","https://openalex.org/W6607527791","https://openalex.org/W6609687017","https://openalex.org/W6624203907","https://openalex.org/W6674525294","https://openalex.org/W6676930901","https://openalex.org/W6678573245","https://openalex.org/W6680508596","https://openalex.org/W6680634009","https://openalex.org/W6681302627","https://openalex.org/W6683656872","https://openalex.org/W6715214426"],"related_works":["https://openalex.org/W2924366642","https://openalex.org/W2062592733","https://openalex.org/W3173875945","https://openalex.org/W3159101980","https://openalex.org/W2966125521","https://openalex.org/W2085627709","https://openalex.org/W2150355991","https://openalex.org/W2381518157","https://openalex.org/W2081383551","https://openalex.org/W2725311638"],"abstract_inverted_index":{"High-throughput":[0],"omics":[1,17,42,116,178],"data":[2,18,43,130,179,187],"are":[3,45],"generated":[4],"almost":[5],"with":[6,28,56,114,123,142,160,214],"no":[7],"limit":[8],"nowadays.":[9],"It":[10],"becomes":[11],"increasingly":[12],"important":[13],"to":[14,20,65,137,145,152,204],"integrate":[15],"different":[16,41,128,134],"types":[19,131],"disentangle":[21],"the":[22,29,38,63,67,138,143,147,154,161,197],"molecular":[23],"machinery":[24],"of":[25,140],"complex":[26,69],"diseases":[27],"hope":[30],"for":[31,85,109],"better":[32],"disease":[33,76,110,172],"prevention":[34],"and":[35,74,94,112,157,185],"treatment.":[36],"Since":[37],"relationship":[39,70],"among":[40],"features":[44,73],"typically":[46],"unknown,":[47],"a":[48,53,57,75,104],"supervised":[49],"learning":[50],"model":[51,108,168],"assuming":[52],"particular":[54],"distribution":[55],"specific":[58],"structure":[59],"will":[60],"not":[61],"serve":[62],"purpose":[64,144],"capture":[66],"underlying":[68],"between":[71],"multiple":[72,177],"phenotype.":[77],"In":[78],"this":[79],"work,":[80],"we":[81],"briefly":[82],"reviewed":[83],"methods":[84],"kernel":[86,95,120,155,158,211],"fusion":[87],"(KF)":[88],"based":[89],"on":[90],"support":[91],"vector":[92],"machine":[93],"partial":[96],"least":[97],"squares":[98],"(KPLS)":[99],"algorithms.":[100],"We":[101,150],"then":[102],"proposed":[103,151,166,198],"fused":[105,119],"KPLS":[106],"(fKPLS)":[107],"classification":[111,173],"prediction":[113,148],"multilevel":[115],"data.":[117],"The":[118,165],"can":[121,169,201],"deal":[122],"effect":[124,135],"heterogeneity":[125],"in":[126,210],"which":[127],"omic":[129],"may":[132],"have":[133],"contribution":[136],"trait":[139],"interest,":[141],"improve":[146,171],"performance.":[149],"optimize":[153],"parameters":[156],"weights":[159],"genetic":[162],"algorithm":[163],"(GA).":[164],"GA-fKPLS":[167],"substantially":[170],"performance":[174],"by":[175],"integrating":[176],"types,":[180],"demonstrated":[181],"via":[182],"extensive":[183],"simulations":[184],"real":[186],"analysis.":[188],"With":[189],"properly":[190],"defined":[191],"fitness":[192],"functions":[193],"during":[194],"GA":[195],"optimization,":[196],"KF":[199],"method":[200],"be":[202],"extended":[203],"other":[205],"kernel-based":[206],"analyses":[207],"such":[208],"as":[209],"association":[212],"analysis":[213],"common":[215],"or":[216],"rare":[217],"variants.":[218]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
