{"id":"https://openalex.org/W2900945262","doi":"https://doi.org/10.1093/bib/bby111","title":"Characteristics of plant circular RNAs","display_name":"Characteristics of plant circular RNAs","publication_year":2018,"publication_date":"2018-10-19","ids":{"openalex":"https://openalex.org/W2900945262","doi":"https://doi.org/10.1093/bib/bby111","mag":"2900945262","pmid":"https://pubmed.ncbi.nlm.nih.gov/30445438"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby111","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby111","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004870483","display_name":"Qinjie Chu","orcid":"https://orcid.org/0000-0003-1234-3396"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinjie Chu","raw_affiliation_strings":["Institute of Bioinformatics, Zhejiang University, Hangzhou, China","Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027174711","display_name":"Panpan Bai","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Panpan Bai","raw_affiliation_strings":["Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037379879","display_name":"Xintian Zhu","orcid":"https://orcid.org/0000-0001-8597-2762"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xintian Zhu","raw_affiliation_strings":["Institute of Bioinformatics, Zhejiang University, Hangzhou, China","Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002681534","display_name":"Xingchen Zhang","orcid":"https://orcid.org/0000-0002-7784-6042"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingchen Zhang","raw_affiliation_strings":["Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049821571","display_name":"Lingfeng Mao","orcid":"https://orcid.org/0000-0002-5021-8628"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lingfeng Mao","raw_affiliation_strings":["Institute of Bioinformatics, Zhejiang University, Hangzhou, China","Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059480616","display_name":"Qian\u2010Hao Zhu","orcid":"https://orcid.org/0000-0002-6505-7417"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Qian-Hao Zhu","raw_affiliation_strings":["CSIRO Agriculture and Food, Canberra, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIRO Agriculture and Food, Canberra, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210138055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007314776","display_name":"Longjiang Fan","orcid":"https://orcid.org/0000-0003-4846-0500"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longjiang Fan","raw_affiliation_strings":["Institute of Bioinformatics, Zhejiang University, Hangzhou, China","Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083333100","display_name":"Chuyu Ye","orcid":"https://orcid.org/0000-0003-0903-0356"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chu-Yu Ye","raw_affiliation_strings":["Institute of Crop Science, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083333100"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.2958,"has_fulltext":false,"cited_by_count":73,"citation_normalized_percentile":{"value":0.93594706,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"21","issue":"1","first_page":"135","last_page":"143"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9445000290870667,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6352591514587402},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5941829085350037},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.5843911170959473},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.505673885345459},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.491624653339386},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.45199161767959595},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4497324824333191},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44808897376060486},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4206976890563965},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.40730878710746765},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33930450677871704},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2747821807861328},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.23107561469078064},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12782132625579834}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6352591514587402},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5941829085350037},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.5843911170959473},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.505673885345459},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.491624653339386},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.45199161767959595},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4497324824333191},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44808897376060486},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4206976890563965},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.40730878710746765},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33930450677871704},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2747821807861328},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.23107561469078064},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12782132625579834},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bby111","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby111","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30445438","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30445438","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G2311512383","display_name":null,"funder_award_id":"LY17C130004","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G395161780","display_name":null,"funder_award_id":"91740108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329854","display_name":"Jiangsu Collaborative Innovation Center for Modern Crop Production","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1541974580","https://openalex.org/W1566841623","https://openalex.org/W1966411071","https://openalex.org/W1981726010","https://openalex.org/W1993529637","https://openalex.org/W2017919052","https://openalex.org/W2019230794","https://openalex.org/W2023139734","https://openalex.org/W2031593782","https://openalex.org/W2034305079","https://openalex.org/W2048618925","https://openalex.org/W2051477788","https://openalex.org/W2054891772","https://openalex.org/W2055493067","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2086055453","https://openalex.org/W2089465951","https://openalex.org/W2109936378","https://openalex.org/W2115171906","https://openalex.org/W2115662330","https://openalex.org/W2147625377","https://openalex.org/W2148393113","https://openalex.org/W2153655918","https://openalex.org/W2177654732","https://openalex.org/W2284415752","https://openalex.org/W2463753492","https://openalex.org/W2464424326","https://openalex.org/W2470352568","https://openalex.org/W2473991067","https://openalex.org/W2488856559","https://openalex.org/W2527673086","https://openalex.org/W2530008209","https://openalex.org/W2530379120","https://openalex.org/W2531297636","https://openalex.org/W2570440397","https://openalex.org/W2586744929","https://openalex.org/W2591839765","https://openalex.org/W2596986410","https://openalex.org/W2599812844","https://openalex.org/W2606970705","https://openalex.org/W2620469164","https://openalex.org/W2622004629","https://openalex.org/W2736272675","https://openalex.org/W2739035231","https://openalex.org/W2739038511","https://openalex.org/W2743901234","https://openalex.org/W2760503369","https://openalex.org/W2763276841","https://openalex.org/W2765783240","https://openalex.org/W2767099779","https://openalex.org/W2768445704","https://openalex.org/W2770914667","https://openalex.org/W2780789416","https://openalex.org/W2782794356","https://openalex.org/W2783186313","https://openalex.org/W2788795124","https://openalex.org/W2794321561","https://openalex.org/W2883062882","https://openalex.org/W2951344785","https://openalex.org/W3007748498","https://openalex.org/W6741717478","https://openalex.org/W6742825677","https://openalex.org/W6747790384","https://openalex.org/W6747867924","https://openalex.org/W7073830722"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W2046765700","https://openalex.org/W4384345686","https://openalex.org/W1981780420","https://openalex.org/W3030236128","https://openalex.org/W2182707996","https://openalex.org/W4388386498","https://openalex.org/W2906670751","https://openalex.org/W2357937784","https://openalex.org/W45233828"],"abstract_inverted_index":{"Circular":[0],"RNA":[1,10],"(circRNA)":[2],"is":[3],"a":[4,35,143],"kind":[5],"of":[6,23,32,39,56,69,75,89,96,100,106,150],"covalently":[7],"closed":[8],"single-stranded":[9],"molecules":[11],"that":[12],"have":[13,41],"been":[14,42,120],"proved":[15],"to":[16],"play":[17],"important":[18],"roles":[19],"in":[20,25],"transcriptional":[21],"regulation":[22],"genes":[24,91],"diverse":[26],"species.":[27],"With":[28],"the":[29,53,73,87,94,102,109],"rapid":[30],"development":[31],"bioinformatics":[33,77],"tools,":[34],"huge":[36],"number":[37],"(95143)":[38],"circRNAs":[40,71,107,151],"identified":[43],"from":[44,152],"different":[45],"plant":[46,57,70,159],"species,":[47],"providing":[48],"an":[49,123],"opportunity":[50],"for":[51,148],"uncovering":[52],"overall":[54],"characteristics":[55,68],"circRNAs.":[58],"Here,":[59],"based":[60,155],"on":[61,156],"publicly":[62],"available":[63],"circRNAs,":[64,93,101,112],"we":[65,133],"comprehensively":[66],"analyzed":[67],"with":[72],"help":[74],"various":[76],"tools":[78,139],"as":[79,81,140,142],"well":[80,141],"in-house":[82],"scripts":[83],"and":[84,108,114,137,161],"workflows,":[85],"including":[86],"percentage":[88],"coding":[90],"generating":[92],"frequency":[95],"alternative":[97],"splicing":[98,104],"events":[99],"non-canonical":[103],"signals":[105],"networks":[110],"involving":[111],"miRNAs":[113],"mRNAs.":[115],"All":[116],"this":[117,131],"information":[118],"has":[119],"integrated":[121],"into":[122],"upgraded":[124],"online":[125],"database,":[126,132],"PlantcircBase":[127],"3.0":[128],"(http://ibi.zju.edu.cn/plantcircbase/).":[129],"In":[130],"provided":[134],"browse,":[135],"search":[136],"visualization":[138],"web-based":[144],"blast":[145],"tool,":[146],"BLASTcirc,":[147],"prediction":[149],"query":[153],"sequences":[154],"searching":[157],"against":[158],"genomes":[160],"transcriptomes.":[162]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":9}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
