{"id":"https://openalex.org/W2912469524","doi":"https://doi.org/10.1093/bib/bby101","title":"The landscape of miRNA-related ceRNA networks for marking different renal cell carcinoma subtypes","display_name":"The landscape of miRNA-related ceRNA networks for marking different renal cell carcinoma subtypes","publication_year":2018,"publication_date":"2018-09-19","ids":{"openalex":"https://openalex.org/W2912469524","doi":"https://doi.org/10.1093/bib/bby101","mag":"2912469524","pmid":"https://pubmed.ncbi.nlm.nih.gov/30452527"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bib/bby101","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074097861","display_name":"Qin Liu","orcid":"https://orcid.org/0000-0002-2549-3425"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu Qin","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100649502","display_name":"Yanhong Liu","orcid":"https://orcid.org/0000-0002-3595-0554"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanhong Liu","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100703866","display_name":"Menglong Li","orcid":"https://orcid.org/0000-0001-7365-0344"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Menglong Li","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037593812","display_name":"Xuemei Pu","orcid":"https://orcid.org/0000-0002-5519-4258"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuemei Pu","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100693805","display_name":"Yanzhi Guo","orcid":"https://orcid.org/0000-0003-2087-2757"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanzhi Guo","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, Sichuan, P.R. China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100693805","https://openalex.org/A5100703866"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.3966,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.56896497,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"21","issue":"1","first_page":"73","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/competing-endogenous-rna","display_name":"Competing endogenous RNA","score":0.967988908290863},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7425500750541687},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.691991925239563},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6889873147010803},{"id":"https://openalex.org/keywords/renal-cell-carcinoma","display_name":"Renal cell carcinoma","score":0.4429875612258911},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43938368558883667},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.40885934233665466},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.27814537286758423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2471620738506317},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.1914348304271698},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17785951495170593},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.1770637035369873}],"concepts":[{"id":"https://openalex.org/C60365752","wikidata":"https://www.wikidata.org/wiki/Q5156306","display_name":"Competing endogenous RNA","level":5,"score":0.967988908290863},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7425500750541687},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.691991925239563},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6889873147010803},{"id":"https://openalex.org/C2777472916","wikidata":"https://www.wikidata.org/wiki/Q1164529","display_name":"Renal cell carcinoma","level":2,"score":0.4429875612258911},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43938368558883667},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.40885934233665466},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.27814537286758423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2471620738506317},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.1914348304271698},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17785951495170593},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.1770637035369873}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bby101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30452527","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30452527","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bby101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7799999713897705,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2369512285","display_name":null,"funder_award_id":"21573151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2511020624","display_name":null,"funder_award_id":"21675114","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W1582646724","https://openalex.org/W1744683414","https://openalex.org/W1759215449","https://openalex.org/W1906277677","https://openalex.org/W1971623350","https://openalex.org/W1978121836","https://openalex.org/W1988925753","https://openalex.org/W1992499158","https://openalex.org/W1999659955","https://openalex.org/W2010991736","https://openalex.org/W2011267176","https://openalex.org/W2015284016","https://openalex.org/W2016578219","https://openalex.org/W2016913172","https://openalex.org/W2021964072","https://openalex.org/W2041440766","https://openalex.org/W2041492033","https://openalex.org/W2046083040","https://openalex.org/W2046260636","https://openalex.org/W2046387002","https://openalex.org/W2046607138","https://openalex.org/W2064072638","https://openalex.org/W2068202160","https://openalex.org/W2103446563","https://openalex.org/W2103880276","https://openalex.org/W2106030955","https://openalex.org/W2106417221","https://openalex.org/W2110599341","https://openalex.org/W2113209482","https://openalex.org/W2115462905","https://openalex.org/W2115494288","https://openalex.org/W2130687298","https://openalex.org/W2131857902","https://openalex.org/W2132054434","https://openalex.org/W2133742333","https://openalex.org/W2135398049","https://openalex.org/W2138093501","https://openalex.org/W2157893542","https://openalex.org/W2158217645","https://openalex.org/W2158290434","https://openalex.org/W2158485828","https://openalex.org/W2159675211","https://openalex.org/W2159793493","https://openalex.org/W2160131967","https://openalex.org/W2165675181","https://openalex.org/W2194829513","https://openalex.org/W2206968527","https://openalex.org/W2280316621","https://openalex.org/W2288944226","https://openalex.org/W2303055188","https://openalex.org/W2305757496","https://openalex.org/W2340902234","https://openalex.org/W2341291028","https://openalex.org/W2466688850","https://openalex.org/W2468529910","https://openalex.org/W2473286866","https://openalex.org/W2515619833","https://openalex.org/W2520676429","https://openalex.org/W2528381588","https://openalex.org/W2560219063","https://openalex.org/W2560629138","https://openalex.org/W2572135803","https://openalex.org/W2593926329","https://openalex.org/W2603864222","https://openalex.org/W2613447387","https://openalex.org/W2619907255","https://openalex.org/W2726542547","https://openalex.org/W2747781382","https://openalex.org/W2756413984","https://openalex.org/W6698221301","https://openalex.org/W6719712481","https://openalex.org/W6730961474"],"related_works":["https://openalex.org/W1998618295","https://openalex.org/W2605415066","https://openalex.org/W2586183753","https://openalex.org/W3134273865","https://openalex.org/W3135639358","https://openalex.org/W2805285958","https://openalex.org/W3031956330","https://openalex.org/W2939950766","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"We":[0,98],"know":[1],"that":[2],"different":[3,9],"types":[4],"of":[5,27,57,66,82,91,106,122,154,189,205,230],"cancers":[6],"usually":[7],"have":[8],"responses":[10],"to":[11,19,31,139,143,225],"the":[12,21,36,53,63,88,131,151,170,175,181,187,193,201,227,237],"same":[13],"treatment.":[14],"Therefore,":[15],"it":[16],"is":[17],"important":[18],"understand":[20],"similarities":[22],"and":[23,103,129,133,167,177,184,222],"differences":[24],"across":[25,169],"subtypes":[26,56,70,90,183],"cancers,":[28],"so":[29,62],"as":[30],"provide":[32],"a":[33,79,120],"basis":[34],"for":[35,52,86,146,180,200],"individualized":[37],"treatments.":[38],"Until":[39],"now,":[40],"no":[41],"comprehensive":[42],"investigation":[43],"on":[44,94],"competing":[45],"endogenous":[46],"RNAs":[47],"(ceRNAs)":[48],"has":[49],"been":[50],"reported":[51],"three":[54,69,89,157,171,182,212],"main":[55],"renal":[58,208],"cell":[59,207,209],"carcinoma":[60,210],"(RCC),":[61],"regulation":[64],"characteristics":[65],"ceRNAs":[67,195],"in":[68,113,150],"are":[71],"not":[72],"well":[73],"revealed.":[74],"This":[75],"paper":[76],"firstly":[77],"describes":[78],"comparative":[80],"analysis":[81],"ceRNA-ceRNA":[83],"interaction":[84],"networks":[85],"all":[87,101],"RCC":[92,107,190],"based":[93],"differential":[95,197],"microRNAs":[96],"(miRNAs).":[97],"comprehensively":[99],"summarized":[100],"miRNA":[102],"messenger":[104],"RNAdata":[105],"from":[108,218],"126":[109],"matched":[110],"tumor-normal":[111],"tissues":[112],"The":[114],"Cancer":[115],"Genome":[116],"Atlas,":[117],"systematically":[118],"analyzed":[119],"total":[121],"more":[123],"than":[124],"80":[125],"000":[126],"ceRNA":[127,220],"interactions":[128],"highlighted":[130,174],"common":[132,160,176],"specific":[134,162,178,194],"properties":[135,179],"among":[136],"them,":[137],"aiming":[138],"identify":[140],"critical":[141,213],"genes":[142,214],"classify":[144],"them":[145],"providing":[147],"supplementary":[148],"help":[149],"precise":[152],"diagnosis":[153],"RCC.":[155],"From":[156],"aspects,":[158],"including":[159],"or":[161,165],"ceRNAs,":[163],"upregulated":[164],"downregulated":[166],"classifications":[168],"subtypes,":[172],"we":[173],"also":[185],"explored":[186],"classification":[188],"by":[191,232],"combining":[192],"with":[196],"regulations.":[198],"Moreover,":[199],"most":[202],"major":[203],"subtype":[204],"clear":[206],"(KIRC),":[211],"were":[215],"screened":[216],"out":[217],"KIRC":[219,231],"network":[221],"further":[223],"demonstrated":[224],"be":[226],"potential":[228],"biomarkers":[229],"performing":[233],"biological":[234],"experiments":[235],"at":[236],"transcriptional":[238],"level.":[239]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
