{"id":"https://openalex.org/W2894836881","doi":"https://doi.org/10.1093/bib/bby089","title":"Large-scale comparative assessment of computational predictors for lysine post-translational modification sites","display_name":"Large-scale comparative assessment of computational predictors for lysine post-translational modification sites","publication_year":2018,"publication_date":"2018-08-22","ids":{"openalex":"https://openalex.org/W2894836881","doi":"https://doi.org/10.1093/bib/bby089","mag":"2894836881","pmid":"https://pubmed.ncbi.nlm.nih.gov/30285084"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby089","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby089","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/20.500.11850/391772","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013433350","display_name":"Zhen Chen","orcid":"https://orcid.org/0000-0002-9412-9774"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Chen","raw_affiliation_strings":["School of Basic Medical Science, Qingdao University, Dengzhou Road, Qingdao, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Science, Qingdao University, Dengzhou Road, Qingdao, Shandong, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037255059","display_name":"Xuhan Liu","orcid":"https://orcid.org/0000-0003-2368-4655"},"institutions":[{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Xuhan Liu","raw_affiliation_strings":["Medicinal Chemistry, Leiden Academic Centre for Drug Research,Einsteinweg, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry, Leiden Academic Centre for Drug Research,Einsteinweg, Leiden, The Netherlands","institution_ids":["https://openalex.org/I4210133171"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063409460","display_name":"Fuyi Li","orcid":"https://orcid.org/0000-0001-5216-3213"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Fuyi Li","raw_affiliation_strings":["ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia","Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia"],"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369818","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-1847-754X"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","CH"],"is_corresponding":false,"raw_author_name":"Chen Li","raw_affiliation_strings":["Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia","Institute of Molecular Systems Biology, ETH Z\u00fcrich,Auguste-Piccard-Hof, Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Institute of Molecular Systems Biology, ETH Z\u00fcrich,Auguste-Piccard-Hof, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042243195","display_name":"Tatiana T. Marquez\u2010Lago","orcid":"https://orcid.org/0000-0003-3279-5592"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tatiana Marquez-Lago","raw_affiliation_strings":["Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042438246","display_name":"Andr\u00e9 Leier","orcid":"https://orcid.org/0000-0002-2647-2693"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Leier","raw_affiliation_strings":["Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research,Kyoto University, Uji, Kyoto, Japan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research,Kyoto University, Uji, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058054791","display_name":"Geoffrey I. Webb","orcid":"https://orcid.org/0000-0001-9963-5169"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Geoffrey I Webb","raw_affiliation_strings":["Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC, Australia"],"affiliations":[{"raw_affiliation_string":"Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100751164","display_name":"Dakang Xu","orcid":"https://orcid.org/0000-0003-2415-4920"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]},{"id":"https://openalex.org/I2802600346","display_name":"Hudson Institute of Medical Research","ror":"https://ror.org/0083mf965","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I2802600346"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Dakang Xu","raw_affiliation_strings":["Department of Molecular and Translational Science, Faculty of Medicine, Hudson Institute of Medical Research, Monash University, Melbourne, VIC, Australia","Faculty of Medical Laboratory Science, Ruijin Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Translational Science, Faculty of Medicine, Hudson Institute of Medical Research, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I2802600346","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Faculty of Medical Laboratory Science, Ruijin Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I2801556517","https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048164886","display_name":"A. Ian Smith","orcid":"https://orcid.org/0000-0002-4143-2892"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Alexander Ian Smith","raw_affiliation_strings":["ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia","Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia"],"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100440377","display_name":"Lei Li","orcid":"https://orcid.org/0000-0003-0266-8939"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Li","raw_affiliation_strings":["School of Basic Medical Science, Qingdao University, Dengzhou Road, Qingdao, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Science, Qingdao University, Dengzhou Road, Qingdao, Shandong, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113500576","display_name":"Kuo\u2010Chen Chou","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210098239","display_name":"The Gordon Life Science Institute","ror":"https://ror.org/0135ffj82","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210098239"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Kuo-Chen Chou","raw_affiliation_strings":["Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, China","Gordon Life Science Institute, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"Gordon Life Science Institute, Boston, MA, USA","institution_ids":["https://openalex.org/I4210098239"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia","Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia","Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC, Australia"],"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5012709797"],"corresponding_institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210146297","https://openalex.org/I56590836"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":7.5396,"has_fulltext":false,"cited_by_count":136,"citation_normalized_percentile":{"value":0.98138281,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"20","issue":"6","first_page":"2267","last_page":"2290"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7130631804466248},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6443776488304138},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5761866569519043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.555187463760376},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5524225234985352},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.53221595287323},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5310431122779846},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5207560062408447},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.512087345123291},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.4980931282043457},{"id":"https://openalex.org/keywords/lysine","display_name":"Lysine","score":0.4918966293334961},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4343870282173157},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4179459810256958},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24824663996696472},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.174125075340271},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09218332171440125},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.0810728669166565}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7130631804466248},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6443776488304138},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5761866569519043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.555187463760376},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5524225234985352},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.53221595287323},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5310431122779846},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5207560062408447},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.512087345123291},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.4980931282043457},{"id":"https://openalex.org/C2776016237","wikidata":"https://www.wikidata.org/wiki/Q178430","display_name":"Lysine","level":3,"score":0.4918966293334961},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4343870282173157},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4179459810256958},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24824663996696472},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.174125075340271},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09218332171440125},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.0810728669166565},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bib/bby089","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby089","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30285084","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30285084","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/139585","is_oa":false,"landing_page_url":"https://hdl.handle.net/2440/139585","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/bib/bby089","raw_type":"Journal article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:395c8e7","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5915384","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6954452","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/391772","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/391772","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 20 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000391772","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000391772","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/391772","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/391772","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 20 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1127919792","display_name":null,"funder_award_id":"DP120104460","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G1432717861","display_name":null,"funder_award_id":"10.13039/501100001779","funder_id":"https://openalex.org/F4320320971","funder_display_name":"Monash University"},{"id":"https://openalex.org/G241248248","display_name":null,"funder_award_id":"LP110200333","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G2593152072","display_name":null,"funder_award_id":"4909809","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G6383537973","display_name":null,"funder_award_id":"31770821","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7686493431","display_name":null,"funder_award_id":"1143366","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G7921690166","display_name":null,"funder_award_id":"R01 AI111965","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G844368393","display_name":null,"funder_award_id":"2018-28","funder_id":"https://openalex.org/F4320323365","funder_display_name":"Kyoto University"},{"id":"https://openalex.org/G8536730916","display_name":null,"funder_award_id":"31701142","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310431","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205"},{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323365","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":170,"referenced_works":["https://openalex.org/W95252060","https://openalex.org/W123095054","https://openalex.org/W200419270","https://openalex.org/W1494484168","https://openalex.org/W1497941038","https://openalex.org/W1504725289","https://openalex.org/W1557315235","https://openalex.org/W1951403192","https://openalex.org/W1955146052","https://openalex.org/W1969482818","https://openalex.org/W1969899640","https://openalex.org/W1975092906","https://openalex.org/W1975692560","https://openalex.org/W1977927254","https://openalex.org/W1979751618","https://openalex.org/W1980151353","https://openalex.org/W1983727026","https://openalex.org/W1984060532","https://openalex.org/W1985258161","https://openalex.org/W1988281226","https://openalex.org/W1991189921","https://openalex.org/W1991199546","https://openalex.org/W1993548347","https://openalex.org/W1995173448","https://openalex.org/W1995285602","https://openalex.org/W1995341919","https://openalex.org/W1999118478","https://openalex.org/W1999212541","https://openalex.org/W2003204068","https://openalex.org/W2005697780","https://openalex.org/W2006505144","https://openalex.org/W2008767710","https://openalex.org/W2009113274","https://openalex.org/W2009540433","https://openalex.org/W2013108773","https://openalex.org/W2023540360","https://openalex.org/W2029093937","https://openalex.org/W2029130907","https://openalex.org/W2031668046","https://openalex.org/W2034070267","https://openalex.org/W2036325135","https://openalex.org/W2038681300","https://openalex.org/W2038873127","https://openalex.org/W2043025235","https://openalex.org/W2043274355","https://openalex.org/W2043338013","https://openalex.org/W2047750588","https://openalex.org/W2048356293","https://openalex.org/W2048973039","https://openalex.org/W2050566492","https://openalex.org/W2053502852","https://openalex.org/W2055397908","https://openalex.org/W2056605533","https://openalex.org/W2057623594","https://openalex.org/W2060817283","https://openalex.org/W2061050157","https://openalex.org/W2064675550","https://openalex.org/W2068858732","https://openalex.org/W2069217708","https://openalex.org/W2071700927","https://openalex.org/W2073978750","https://openalex.org/W2074196504","https://openalex.org/W2077494922","https://openalex.org/W2084246818","https://openalex.org/W2086831875","https://openalex.org/W2087158205","https://openalex.org/W2087714970","https://openalex.org/W2088511656","https://openalex.org/W2099514866","https://openalex.org/W2101979121","https://openalex.org/W2103525038","https://openalex.org/W2106413110","https://openalex.org/W2111524632","https://openalex.org/W2111896563","https://openalex.org/W2113459411","https://openalex.org/W2114024619","https://openalex.org/W2118900351","https://openalex.org/W2119821739","https://openalex.org/W2120026469","https://openalex.org/W2121046220","https://openalex.org/W2121417968","https://openalex.org/W2124779485","https://openalex.org/W2130410032","https://openalex.org/W2131774270","https://openalex.org/W2133797106","https://openalex.org/W2141037299","https://openalex.org/W2143210482","https://openalex.org/W2143612262","https://openalex.org/W2144015117","https://openalex.org/W2145786566","https://openalex.org/W2147054306","https://openalex.org/W2148741118","https://openalex.org/W2149298154","https://openalex.org/W2151984950","https://openalex.org/W2152084880","https://openalex.org/W2152339342","https://openalex.org/W2152800101","https://openalex.org/W2153456067","https://openalex.org/W2154139219","https://openalex.org/W2156125289","https://openalex.org/W2156909104","https://openalex.org/W2158714788","https://openalex.org/W2158797467","https://openalex.org/W2159199134","https://openalex.org/W2160257187","https://openalex.org/W2162002416","https://openalex.org/W2163605009","https://openalex.org/W2166086677","https://openalex.org/W2167666169","https://openalex.org/W2167734476","https://openalex.org/W2168012258","https://openalex.org/W2171464043","https://openalex.org/W2208826165","https://openalex.org/W2209329607","https://openalex.org/W2278741011","https://openalex.org/W2397556949","https://openalex.org/W2399634880","https://openalex.org/W2416095812","https://openalex.org/W2467352723","https://openalex.org/W2472513547","https://openalex.org/W2513786151","https://openalex.org/W2532873024","https://openalex.org/W2538445534","https://openalex.org/W2555891876","https://openalex.org/W2558091742","https://openalex.org/W2564829293","https://openalex.org/W2565777687","https://openalex.org/W2566370974","https://openalex.org/W2569814361","https://openalex.org/W2584459311","https://openalex.org/W2601860898","https://openalex.org/W2607268717","https://openalex.org/W2610582292","https://openalex.org/W2612935389","https://openalex.org/W2737403359","https://openalex.org/W2742750032","https://openalex.org/W2747278265","https://openalex.org/W2764095180","https://openalex.org/W2765093153","https://openalex.org/W2766389776","https://openalex.org/W2772581327","https://openalex.org/W2773405722","https://openalex.org/W2791163698","https://openalex.org/W2792518649","https://openalex.org/W2793168264","https://openalex.org/W2794797435","https://openalex.org/W2796061590","https://openalex.org/W2803040688","https://openalex.org/W2808950870","https://openalex.org/W2808998679","https://openalex.org/W2810225085","https://openalex.org/W2911964244","https://openalex.org/W2912269676","https://openalex.org/W2912500072","https://openalex.org/W2919115771","https://openalex.org/W2963266340","https://openalex.org/W2963698810","https://openalex.org/W4210702584","https://openalex.org/W4229602251","https://openalex.org/W4233120011","https://openalex.org/W4239510810","https://openalex.org/W4244190327","https://openalex.org/W6605057409","https://openalex.org/W6663129799","https://openalex.org/W6676984168","https://openalex.org/W6681513673","https://openalex.org/W6684191040","https://openalex.org/W6688167117","https://openalex.org/W6716602928","https://openalex.org/W6728760601"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2329895846"],"abstract_inverted_index":{"Lysine":[0],"post-translational":[1],"modifications":[2],"(PTMs)":[3],"play":[4],"a":[5,47,53,125,129,142,201],"crucial":[6,149],"role":[7],"in":[8,42,70,120,185,236,264,280,314],"regulating":[9],"diverse":[10],"functions":[11],"and":[12,39,76,80,93,99,106,160,168,226,239,258,293,303,309],"biological":[13],"processes":[14],"of":[15,19,23,32,35,55,114,132,144,153,191,229,233,260,271,296],"proteins.":[16],"However,":[17],"because":[18],"the":[20,43,111,151,181,189,237,256,276,294,315],"large":[21,112,130],"volumes":[22],"sequencing":[24],"data":[25,277],"generated":[26],"from":[27,110],"genome-sequencing":[28],"projects,":[29],"systematic":[30,227],"identification":[31,61],"different":[33],"types":[34,232],"lysine":[36,59,108,137,196,213,234,252],"PTM":[37,40,60,138,197,253,266,307],"substrates":[38],"sites":[41],"entire":[44],"proteome":[45],"remains":[46],"major":[48,231],"challenge.":[49],"In":[50],"recent":[51],"years,":[52],"number":[54],"computational":[56,102,203],"methods":[57,66,92,250],"for":[58,136,150,195,212,224,251],"have":[62],"been":[63],"developed.":[64],"These":[65],"show":[67,245],"high":[68],"diversity":[69],"their":[71,95],"core":[72],"algorithms,":[73,158],"features":[74],"extracted":[75],"feature":[77,163],"selection":[78],"techniques":[79,103,263],"evaluation":[81,167],"strategies.":[82],"There":[83],"is":[84,283],"therefore":[85],"an":[86],"urgent":[87],"need":[88],"to":[89,97,104,179,187],"revisit":[90],"these":[91],"summarize":[94],"methodologies,":[96],"improve":[98,180],"further":[100,172],"develop":[101],"identify":[105],"characterize":[107],"PTMs":[109,235],"amounts":[113],"sequence":[115,159],"data.":[116],"With":[117],"this":[118,281,290],"goal":[119],"mind,":[121],"we":[122,199],"first":[123],"provide":[124,173,300],"comprehensive":[126,291],"survey":[127],"on":[128,176],"collection":[131],"49":[133],"state-of-the-art":[134],"approaches":[135],"prediction.":[139,267],"We":[140,171,288],"cover":[141],"variety":[143],"important":[145],"aspects":[146],"that":[147,246],"are":[148],"development":[152],"successful":[154],"predictors,":[155],"including":[156],"operating":[157],"structural":[161],"features,":[162],"selection,":[164],"model":[165,182],"performance":[166],"software":[169],"utility.":[170],"our":[174],"thoughts":[175],"potential":[177,257],"strategies":[178],"performance.":[183],"Second,":[184],"order":[186],"examine":[188],"feasibility":[190],"using":[192,215],"deep":[193,261,297],"learning":[194,262,298],"prediction,":[198],"propose":[200],"novel":[202],"framework,":[204],"termed":[205],"MUscADEL":[206,247],"(Multiple":[207],"Scalable":[208],"Accurate":[209],"Deep":[210],"Learner":[211],"PTMs),":[214],"deep,":[216],"bidirectional,":[217],"long":[218],"short-term":[219],"memory":[220],"recurrent":[221],"neural":[222],"networks":[223],"accurate":[225],"mapping":[228],"eight":[230],"human":[238],"mouse":[240],"proteomes.":[241],"Extensive":[242],"benchmarking":[243],"tests":[244],"outperforms":[248],"current":[249],"characterization,":[254],"demonstrating":[255],"power":[259],"protein":[265],"The":[268],"web":[269],"server":[270],"MUscADEL,":[272],"together":[273],"with":[274],"all":[275],"sets":[278],"assembled":[279],"study,":[282],"freely":[284],"available":[285],"at":[286],"http://muscadel.erc.monash.edu/.":[287],"anticipate":[289],"review":[292],"application":[295],"will":[299],"practical":[301],"guide":[302],"useful":[304],"insights":[305],"into":[306],"prediction":[308],"inspire":[310],"future":[311],"bioinformatics":[312],"studies":[313],"related":[316],"fields.":[317]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":24},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
