{"id":"https://openalex.org/W2889325774","doi":"https://doi.org/10.1093/bib/bby078","title":"Binding site matching in rational drug design: algorithms and applications","display_name":"Binding site matching in rational drug design: algorithms and applications","publication_year":2018,"publication_date":"2018-08-03","ids":{"openalex":"https://openalex.org/W2889325774","doi":"https://doi.org/10.1093/bib/bby078","mag":"2889325774","pmid":"https://pubmed.ncbi.nlm.nih.gov/30169563"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby078","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby078","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://digitalcommons.lsu.edu/cgi/viewcontent.cgi?article=1611&context=biosci_pubs","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049666915","display_name":"Misagh Naderi","orcid":"https://orcid.org/0000-0001-9866-5366"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Misagh Naderi","raw_affiliation_strings":["Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061732129","display_name":"Jeffrey Lemoine","orcid":"https://orcid.org/0000-0002-9632-8419"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Mitchell Lemoine","raw_affiliation_strings":["Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA","Division of Computer Science and Engineering, Louisiana State University, Baton Rouge, LA 70803, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]},{"raw_affiliation_string":"Division of Computer Science and Engineering, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075881953","display_name":"Rajiv Gandhi Govindaraj","orcid":"https://orcid.org/0000-0003-2364-5429"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rajiv Gandhi Govindaraj","raw_affiliation_strings":["Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034171581","display_name":"Omar Zade Kana","orcid":null},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Omar Zade Kana","raw_affiliation_strings":["Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064973035","display_name":"Wei P. Feinstein","orcid":null},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Pan Feinstein","raw_affiliation_strings":["High-Performance Computing, Louisiana State University, Baton Rouge, LA 70803, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High-Performance Computing, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033579800","display_name":"Micha\u0142 Bryli\u0144ski","orcid":"https://orcid.org/0000-0002-6204-2869"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michal Brylinski","raw_affiliation_strings":["Center for Computation & Technology, Louisiana State University, Baton Rouge, LA 70803, USA","Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computation & Technology, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]},{"raw_affiliation_string":"Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA","institution_ids":["https://openalex.org/I121820613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033579800"],"corresponding_institution_ids":["https://openalex.org/I121820613"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.4389,"has_fulltext":false,"cited_by_count":53,"citation_normalized_percentile":{"value":0.93581081,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"20","issue":"6","first_page":"2167","last_page":"2184"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7121918797492981},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6411531567573547},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6203312277793884},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5972200036048889},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5794856548309326},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4851151704788208},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4243970811367035},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40252193808555603},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3752706050872803},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34120792150497437},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3319626450538635},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.226268470287323},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17607158422470093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12103044986724854},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12055519223213196}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7121918797492981},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6411531567573547},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6203312277793884},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5972200036048889},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5794856548309326},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4851151704788208},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4243970811367035},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40252193808555603},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3752706050872803},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34120792150497437},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3319626450538635},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.226268470287323},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17607158422470093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12103044986724854},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12055519223213196},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064798","descriptor_name":"Polypharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064798","descriptor_name":"Polypharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064798","descriptor_name":"Polypharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064798","descriptor_name":"Polypharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bby078","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby078","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30169563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30169563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.lsu.edu:biosci_pubs-1611","is_oa":true,"landing_page_url":"https://digitalcommons.lsu.edu/biosci_pubs/612","pdf_url":"https://digitalcommons.lsu.edu/cgi/viewcontent.cgi?article=1611&context=biosci_pubs","source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:europepmc.org:5915369","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6954434","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repository.lsu.edu:biosci_pubs-1611","is_oa":true,"landing_page_url":"https://repository.lsu.edu/biosci_pubs/612","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:digitalcommons.lsu.edu:biosci_pubs-1611","is_oa":true,"landing_page_url":"https://digitalcommons.lsu.edu/biosci_pubs/612","pdf_url":"https://digitalcommons.lsu.edu/cgi/viewcontent.cgi?article=1611&context=biosci_pubs","source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G5490367575","display_name":null,"funder_award_id":"R35GM119524","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2889325774.pdf"},"referenced_works_count":168,"referenced_works":["https://openalex.org/W145501074","https://openalex.org/W196131166","https://openalex.org/W853235284","https://openalex.org/W1517566065","https://openalex.org/W1598796236","https://openalex.org/W1849277567","https://openalex.org/W1962607015","https://openalex.org/W1965615878","https://openalex.org/W1969657447","https://openalex.org/W1972091733","https://openalex.org/W1974638435","https://openalex.org/W1974944535","https://openalex.org/W1975453400","https://openalex.org/W1977373583","https://openalex.org/W1979477696","https://openalex.org/W1979914800","https://openalex.org/W1980675521","https://openalex.org/W1981159786","https://openalex.org/W1982309045","https://openalex.org/W1982945330","https://openalex.org/W1983815352","https://openalex.org/W1986046522","https://openalex.org/W1988452823","https://openalex.org/W1997037174","https://openalex.org/W1999613945","https://openalex.org/W2004175162","https://openalex.org/W2012666355","https://openalex.org/W2015147525","https://openalex.org/W2017285544","https://openalex.org/W2017735744","https://openalex.org/W2018661561","https://openalex.org/W2019523557","https://openalex.org/W2021954541","https://openalex.org/W2024519892","https://openalex.org/W2024908724","https://openalex.org/W2031194866","https://openalex.org/W2031772330","https://openalex.org/W2033345590","https://openalex.org/W2035035706","https://openalex.org/W2040595595","https://openalex.org/W2041417685","https://openalex.org/W2041877730","https://openalex.org/W2044424923","https://openalex.org/W2044444984","https://openalex.org/W2046112356","https://openalex.org/W2046363258","https://openalex.org/W2047544230","https://openalex.org/W2050982038","https://openalex.org/W2051895548","https://openalex.org/W2056951033","https://openalex.org/W2059981954","https://openalex.org/W2063831812","https://openalex.org/W2065807927","https://openalex.org/W2069957576","https://openalex.org/W2071410533","https://openalex.org/W2072128103","https://openalex.org/W2076127975","https://openalex.org/W2083589318","https://openalex.org/W2085277871","https://openalex.org/W2085833518","https://openalex.org/W2089852907","https://openalex.org/W2090794687","https://openalex.org/W2091563009","https://openalex.org/W2096541451","https://openalex.org/W2097117768","https://openalex.org/W2102426328","https://openalex.org/W2103445331","https://openalex.org/W2104337806","https://openalex.org/W2104812418","https://openalex.org/W2105902442","https://openalex.org/W2106449850","https://openalex.org/W2111078532","https://openalex.org/W2111973517","https://openalex.org/W2112109058","https://openalex.org/W2112946624","https://openalex.org/W2114162221","https://openalex.org/W2116007667","https://openalex.org/W2116963147","https://openalex.org/W2117077088","https://openalex.org/W2119470100","https://openalex.org/W2120905579","https://openalex.org/W2121604817","https://openalex.org/W2124093680","https://openalex.org/W2125677968","https://openalex.org/W2126677834","https://openalex.org/W2127067710","https://openalex.org/W2127587566","https://openalex.org/W2128402268","https://openalex.org/W2132395520","https://openalex.org/W2134967712","https://openalex.org/W2136567909","https://openalex.org/W2136750916","https://openalex.org/W2137955461","https://openalex.org/W2138512826","https://openalex.org/W2138770756","https://openalex.org/W2139942857","https://openalex.org/W2140538197","https://openalex.org/W2141461755","https://openalex.org/W2143210482","https://openalex.org/W2144071905","https://openalex.org/W2144258433","https://openalex.org/W2144477832","https://openalex.org/W2145358391","https://openalex.org/W2146940292","https://openalex.org/W2147733973","https://openalex.org/W2149434585","https://openalex.org/W2149755478","https://openalex.org/W2150479378","https://openalex.org/W2151357092","https://openalex.org/W2152326664","https://openalex.org/W2152454589","https://openalex.org/W2153251136","https://openalex.org/W2153613893","https://openalex.org/W2153635508","https://openalex.org/W2154896031","https://openalex.org/W2155157373","https://openalex.org/W2158714788","https://openalex.org/W2159560083","https://openalex.org/W2160815625","https://openalex.org/W2161151688","https://openalex.org/W2161692857","https://openalex.org/W2162825663","https://openalex.org/W2164088236","https://openalex.org/W2170146596","https://openalex.org/W2177317049","https://openalex.org/W2177550115","https://openalex.org/W2195959843","https://openalex.org/W2222512263","https://openalex.org/W2257979135","https://openalex.org/W2263739890","https://openalex.org/W2266287912","https://openalex.org/W2322633051","https://openalex.org/W2343614482","https://openalex.org/W2345512687","https://openalex.org/W2365765272","https://openalex.org/W2406193566","https://openalex.org/W2408984925","https://openalex.org/W2432199245","https://openalex.org/W2467020497","https://openalex.org/W2521095856","https://openalex.org/W2555587566","https://openalex.org/W2557218965","https://openalex.org/W2605583996","https://openalex.org/W2607783486","https://openalex.org/W2608351113","https://openalex.org/W2609070191","https://openalex.org/W2618265628","https://openalex.org/W2625293850","https://openalex.org/W2727758171","https://openalex.org/W2740067745","https://openalex.org/W2764184942","https://openalex.org/W2767318646","https://openalex.org/W2767826488","https://openalex.org/W2771782493","https://openalex.org/W2788085840","https://openalex.org/W2793261026","https://openalex.org/W2950939097","https://openalex.org/W2951395093","https://openalex.org/W2951667627","https://openalex.org/W4231109964","https://openalex.org/W4239749705","https://openalex.org/W6607921718","https://openalex.org/W6680409522","https://openalex.org/W6681532229","https://openalex.org/W6682156222","https://openalex.org/W6687320464","https://openalex.org/W6736618506","https://openalex.org/W6737092020"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"Interactions":[0],"between":[1],"proteins":[2],"and":[3,61,93,142,164,194],"small":[4,16,95],"molecules":[5,96],"are":[6,117,148],"critical":[7],"for":[8],"biological":[9,42],"functions.":[10],"These":[11,115],"interactions":[12],"often":[13],"occur":[14],"in":[15,56,160,174,177],"cavities":[17],"within":[18],"protein":[19,101,192],"structures,":[20],"known":[21],"as":[22,97,99,203],"ligand-binding":[23],"pockets.":[24,114],"Understanding":[25],"the":[26,124,134,143,169,178,183,189,195],"physicochemical":[27],"qualities":[28],"of":[29,41,58,85,137,145,156,171,185,191,197],"binding":[30,74],"pockets":[31,55],"is":[32],"essential":[33],"to":[34,51,70,91,112,127,133],"improve":[35],"not":[36],"only":[37],"our":[38],"basic":[39],"knowledge":[40],"systems,":[43],"but":[44],"also":[45,151],"drug":[46,161,175],"development":[47,184],"procedures.":[48],"In":[49,103,131],"order":[50],"quantify":[52],"similarities":[53],"among":[54],"terms":[57],"their":[59,138],"geometries":[60],"chemical":[62],"properties,":[63],"either":[64],"bound":[65],"ligands":[66],"can":[67,76],"be":[68,77],"compared":[69],"one":[71],"another":[72],"or":[73],"sites":[75],"matched":[78],"directly.":[79],"Both":[80],"perspectives":[81],"routinely":[82],"take":[83],"advantage":[84],"computational":[86,157],"methods":[87,116],"including":[88],"various":[89],"techniques":[90,173],"represent":[92],"compare":[94],"well":[98],"local":[100],"structures.":[102],"this":[104],"review,":[105],"we":[106,180],"survey":[107],"12":[108],"tools":[109],"widely":[110],"used":[111],"match":[113],"divided":[118],"into":[119],"five":[120],"categories":[121],"based":[122],"on":[123,168,182],"algorithm":[125],"implemented":[126],"construct":[128],"binding-site":[129],"alignments.":[130],"addition":[132],"comprehensive":[135],"analysis":[136],"algorithms,":[139],"test":[140],"sets":[141],"performance":[144],"each":[146],"method":[147],"described.":[149],"We":[150],"discuss":[152],"general":[153],"pharmacological":[154],"applications":[155],"pocket":[158],"matching":[159],"repurposing,":[162],"polypharmacology":[163],"side":[165],"effects.":[166],"Reflecting":[167],"importance":[170],"these":[172],"discovery,":[176],"end,":[179],"elaborate":[181],"more":[186],"accurate":[187],"meta-predictors,":[188],"incorporation":[190],"flexibility":[193],"integration":[196],"powerful":[198],"artificial":[199],"intelligence":[200],"technologies":[201],"such":[202],"deep":[204],"learning.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
