{"id":"https://openalex.org/W2887285382","doi":"https://doi.org/10.1093/bib/bby066","title":"Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches","display_name":"Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches","publication_year":2018,"publication_date":"2018-07-04","ids":{"openalex":"https://openalex.org/W2887285382","doi":"https://doi.org/10.1093/bib/bby066","mag":"2887285382","pmid":"https://pubmed.ncbi.nlm.nih.gov/30099485"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby066","pdf_url":"https://academic.oup.com/bib/article-pdf/20/6/2028/31789414/bby066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/20/6/2028/31789414/bby066.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013517179","display_name":"Hai Nguyen","orcid":"https://orcid.org/0000-0003-0380-4197"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Dai Hai Nguyen","raw_affiliation_strings":["Department of machine learning and bioinformatics, Bioinformatics Center, Kyoto University, Uji, Japan"],"affiliations":[{"raw_affiliation_string":"Department of machine learning and bioinformatics, Bioinformatics Center, Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061062178","display_name":"Canh Hao Nguyen","orcid":"https://orcid.org/0000-0002-0274-5693"},"institutions":[{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Canh Hao Nguyen","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["FI","JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan","Department of Computer Science, Aalto University, Otakaari, FI, Finland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"raw_affiliation_string":"Department of Computer Science, Aalto University, Otakaari, FI, Finland","institution_ids":["https://openalex.org/I9927081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5013517179"],"corresponding_institution_ids":["https://openalex.org/I22299242"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.1717,"has_fulltext":false,"cited_by_count":87,"citation_normalized_percentile":{"value":0.92916021,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"20","issue":"6","first_page":"2028","last_page":"2043"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.7376325726509094},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6454872488975525},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6446330547332764},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6317787170410156},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.5907727479934692},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4655376672744751},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.457379549741745},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45612987875938416},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4423951208591461},{"id":"https://openalex.org/keywords/fragmentation","display_name":"Fragmentation (computing)","score":0.43678343296051025},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.345355361700058},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.32709962129592896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22264203429222107},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22164490818977356},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13849565386772156},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.09852960705757141},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.081402987241745}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.7376325726509094},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6454872488975525},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6446330547332764},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6317787170410156},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.5907727479934692},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4655376672744751},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.457379549741745},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45612987875938416},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4423951208591461},{"id":"https://openalex.org/C191015642","wikidata":"https://www.wikidata.org/wiki/Q1132459","display_name":"Fragmentation (computing)","level":2,"score":0.43678343296051025},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.345355361700058},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.32709962129592896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22264203429222107},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22164490818977356},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13849565386772156},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.09852960705757141},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.081402987241745},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bby066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby066","pdf_url":"https://academic.oup.com/bib/article-pdf/20/6/2028/31789414/bby066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30099485","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30099485","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5915366","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6954430","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bby066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby066","pdf_url":"https://academic.oup.com/bib/article-pdf/20/6/2028/31789414/bby066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G6642769225","display_name":null,"funder_award_id":"JPMJAC1503","funder_id":"https://openalex.org/F4320338113","funder_display_name":"Accelerated Innovation Research Initiative Turning Top Science and Ideas into High-Impact Values"},{"id":"https://openalex.org/G7347817016","display_name":null,"funder_award_id":"16H02868","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321855","display_name":"Tekes","ror":"https://ror.org/02ag8cq23"},{"id":"https://openalex.org/F4320338113","display_name":"Accelerated Innovation Research Initiative Turning Top Science and Ideas into High-Impact Values","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2887285382.pdf","grobid_xml":"https://content.openalex.org/works/W2887285382.grobid-xml"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W593659422","https://openalex.org/W1485685653","https://openalex.org/W1561733128","https://openalex.org/W1583837637","https://openalex.org/W1598925596","https://openalex.org/W1633020330","https://openalex.org/W1761787460","https://openalex.org/W1880262756","https://openalex.org/W1920328734","https://openalex.org/W1966156878","https://openalex.org/W1969727638","https://openalex.org/W1981593008","https://openalex.org/W1982468602","https://openalex.org/W1983624870","https://openalex.org/W1986756052","https://openalex.org/W1994309289","https://openalex.org/W2001082470","https://openalex.org/W2008751190","https://openalex.org/W2013178512","https://openalex.org/W2015503332","https://openalex.org/W2026465178","https://openalex.org/W2026834364","https://openalex.org/W2028421938","https://openalex.org/W2028705141","https://openalex.org/W2031136928","https://openalex.org/W2037559873","https://openalex.org/W2046965677","https://openalex.org/W2055766448","https://openalex.org/W2066538400","https://openalex.org/W2067637119","https://openalex.org/W2075356606","https://openalex.org/W2081301924","https://openalex.org/W2081580037","https://openalex.org/W2084375915","https://openalex.org/W2086337711","https://openalex.org/W2087490875","https://openalex.org/W2092818812","https://openalex.org/W2096525541","https://openalex.org/W2101432452","https://openalex.org/W2107183338","https://openalex.org/W2108687351","https://openalex.org/W2109743529","https://openalex.org/W2115003579","https://openalex.org/W2115993694","https://openalex.org/W2124225821","https://openalex.org/W2127360645","https://openalex.org/W2135046866","https://openalex.org/W2138019504","https://openalex.org/W2139212933","https://openalex.org/W2144803530","https://openalex.org/W2150842057","https://openalex.org/W2151531457","https://openalex.org/W2158085718","https://openalex.org/W2167578100","https://openalex.org/W2171188027","https://openalex.org/W2171319841","https://openalex.org/W2173552987","https://openalex.org/W2179948434","https://openalex.org/W2318519065","https://openalex.org/W2440171437","https://openalex.org/W2504691963","https://openalex.org/W2509323053","https://openalex.org/W2551876238","https://openalex.org/W2560674852","https://openalex.org/W2567959389","https://openalex.org/W2610361454","https://openalex.org/W2767683865","https://openalex.org/W2775005287","https://openalex.org/W2808125645","https://openalex.org/W2952140440","https://openalex.org/W3000274020","https://openalex.org/W3003413895","https://openalex.org/W3086332784","https://openalex.org/W3099503819","https://openalex.org/W3102650760","https://openalex.org/W3105963012","https://openalex.org/W4206610437","https://openalex.org/W4214740783","https://openalex.org/W4231510805","https://openalex.org/W4301815727","https://openalex.org/W6629389771","https://openalex.org/W6638258969","https://openalex.org/W6639619044","https://openalex.org/W6640308425","https://openalex.org/W6653866333","https://openalex.org/W6657348251","https://openalex.org/W6675025704","https://openalex.org/W6676634215","https://openalex.org/W6677743583","https://openalex.org/W6682443497","https://openalex.org/W6682998919","https://openalex.org/W6685177488","https://openalex.org/W6685188343","https://openalex.org/W6697311474","https://openalex.org/W6736955731","https://openalex.org/W6746845208"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2912862995","https://openalex.org/W2898682754","https://openalex.org/W3129816939","https://openalex.org/W2985427592","https://openalex.org/W2889841093","https://openalex.org/W2151082141","https://openalex.org/W2365236913"],"abstract_inverted_index":{"Metabolomics":[0],"involves":[1],"studies":[2],"of":[3,7,21,31,38,47,53,64,78,91],"a":[4,19,82,88,112],"great":[5],"number":[6,90],"metabolites,":[8],"which":[9,131,186],"are":[10],"small":[11],"molecules":[12],"present":[13],"in":[14,85,143,168],"biological":[15,54],"systems.":[16,55],"They":[17],"play":[18],"lot":[20],"important":[22],"functions":[23],"such":[24,69],"as":[25,70],"energy":[26],"transport,":[27],"signaling,":[28],"building":[29],"block":[30],"cells":[32],"and":[33,44,67,148,171],"inhibition/catalysis.":[34],"Understanding":[35],"biochemical":[36],"characteristics":[37],"the":[39,51,59,62,76,79,106,136,165],"metabolites":[40,80,102],"is":[41,57,103],"an":[42,178],"essential":[43],"significant":[45],"part":[46],"metabolomics":[48,86],"to":[49,61,189],"enlarge":[50],"knowledge":[52],"It":[56],"also":[58,176],"key":[60],"development":[63],"many":[65,116,118],"applications":[66],"areas":[68],"biotechnology,":[71],"biomedicine":[72],"or":[73],"pharmaceuticals.":[74],"However,":[75],"identification":[77,129,163],"remains":[81],"challenging":[83],"task":[84],"with":[87,120,164],"huge":[89],"potentially":[92],"interesting":[93],"but":[94],"unknown":[95],"metabolites.":[96],"The":[97],"standard":[98],"method":[99],"for":[100,126,161],"identifying":[101],"based":[104],"on":[105,167,181,192],"mass":[107,140],"spectrometry":[108],"(MS)":[109],"preceded":[110],"by":[111],"separation":[113],"technique.":[114],"Over":[115],"decades,":[117],"techniques":[119],"different":[121],"approaches":[122],"have":[123],"been":[124],"proposed":[125],"MS-based":[127],"metabolite":[128,162],"task,":[130],"can":[132,187],"be":[133],"divided":[134],"into":[135],"following":[137],"four":[138],"groups:":[139],"spectra":[141],"database,":[142],"silico":[144,169],"fragmentation,":[145,170],"fragmentation":[146],"tree":[147],"machine":[149,172,183],"learning.":[150],"In":[151],"this":[152,193],"review":[153],"paper,":[154],"we":[155],"thoroughly":[156],"survey":[157],"currently":[158],"available":[159],"tools":[160],"focus":[166],"learning-based":[173],"approaches.":[174],"We":[175],"give":[177],"intensive":[179],"discussion":[180],"advanced":[182],"learning":[184],"methods,":[185],"lead":[188],"further":[190],"improvement":[191],"task.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-04T09:10:02.777135","created_date":"2025-10-10T00:00:00"}
