{"id":"https://openalex.org/W2883632755","doi":"https://doi.org/10.1093/bib/bby055","title":"The small peptide world in long noncoding RNAs","display_name":"The small peptide world in long noncoding RNAs","publication_year":2018,"publication_date":"2018-05-31","ids":{"openalex":"https://openalex.org/W2883632755","doi":"https://doi.org/10.1093/bib/bby055","mag":"2883632755","pmid":"https://pubmed.ncbi.nlm.nih.gov/30010717"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby055","pdf_url":"https://academic.oup.com/bib/article-pdf/20/5/1853/31555377/bby055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/20/5/1853/31555377/bby055.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036985321","display_name":"Seowon Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Seo-Won Choi","raw_affiliation_strings":["Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100330183","display_name":"Hyunwoo Kim","orcid":"https://orcid.org/0000-0001-6785-7760"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Hyun-Woo Kim","raw_affiliation_strings":["Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084486486","display_name":"Jin\u2010Wu Nam","orcid":"https://orcid.org/0000-0003-0047-3687"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jin-Wu Nam","raw_affiliation_strings":["Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0003-0047-3687","affiliations":[{"raw_affiliation_string":"Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea","institution_ids":["https://openalex.org/I4575257"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5036985321","https://openalex.org/A5084486486","https://openalex.org/A5100330183"],"corresponding_institution_ids":["https://openalex.org/I4575257"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":7.2377,"has_fulltext":true,"cited_by_count":286,"citation_normalized_percentile":{"value":0.98513827,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"20","issue":"5","first_page":"1853","last_page":"1864"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.8062858581542969},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.7091320753097534},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6978170871734619},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6074778437614441},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.575039267539978},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5722213983535767},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.535545825958252},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.334320068359375},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3193833827972412}],"concepts":[{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.8062858581542969},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.7091320753097534},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6978170871734619},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6074778437614441},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.575039267539978},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5722213983535767},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.535545825958252},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.334320068359375},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3193833827972412}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bby055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby055","pdf_url":"https://academic.oup.com/bib/article-pdf/20/5/1853/31555377/bby055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30010717","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30010717","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5874731","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6917221","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bby055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby055","pdf_url":"https://academic.oup.com/bib/article-pdf/20/5/1853/31555377/bby055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1691644927","display_name":null,"funder_award_id":"NRF-2017M3A9G8084539, 2018R1A2B2003782","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G2025626218","display_name":null,"funder_award_id":"NRF-2014M3C9A3063541","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G2147243150","display_name":null,"funder_award_id":"2017M3A9G8084539","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G2255408469","display_name":null,"funder_award_id":"2014M3C9A3063541","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G5139173886","display_name":null,"funder_award_id":"NRF-2014M3C9A3063541","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G6401775497","display_name":null,"funder_award_id":"NRF-2014M3C9A3063541","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G6628724354","display_name":null,"funder_award_id":"HI15C1578","funder_id":"https://openalex.org/F4320322107","funder_display_name":"Korea Health Industry Development Institute"},{"id":"https://openalex.org/G7163874969","display_name":null,"funder_award_id":"2014M3C9A3063541","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322107","display_name":"Korea Health Industry Development Institute","ror":"https://ror.org/00fdzyk40"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883632755.pdf","grobid_xml":"https://content.openalex.org/works/W2883632755.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W1856228646","https://openalex.org/W1969161156","https://openalex.org/W1970569349","https://openalex.org/W1970741980","https://openalex.org/W1981365458","https://openalex.org/W1983583458","https://openalex.org/W1986705163","https://openalex.org/W1991679818","https://openalex.org/W1998308063","https://openalex.org/W1998422171","https://openalex.org/W2003861150","https://openalex.org/W2012739246","https://openalex.org/W2014201551","https://openalex.org/W2024751967","https://openalex.org/W2027010998","https://openalex.org/W2029173942","https://openalex.org/W2033492309","https://openalex.org/W2035031476","https://openalex.org/W2048194168","https://openalex.org/W2051282896","https://openalex.org/W2052503008","https://openalex.org/W2054897842","https://openalex.org/W2058970225","https://openalex.org/W2061548680","https://openalex.org/W2062313490","https://openalex.org/W2063950568","https://openalex.org/W2067183112","https://openalex.org/W2071849521","https://openalex.org/W2071875941","https://openalex.org/W2075320162","https://openalex.org/W2079517684","https://openalex.org/W2085220756","https://openalex.org/W2086157203","https://openalex.org/W2092987085","https://openalex.org/W2100424218","https://openalex.org/W2102304447","https://openalex.org/W2105349784","https://openalex.org/W2110356447","https://openalex.org/W2113224683","https://openalex.org/W2116168949","https://openalex.org/W2118023394","https://openalex.org/W2120597842","https://openalex.org/W2124779706","https://openalex.org/W2128619556","https://openalex.org/W2129078669","https://openalex.org/W2129375421","https://openalex.org/W2129883957","https://openalex.org/W2133968430","https://openalex.org/W2139658526","https://openalex.org/W2140874466","https://openalex.org/W2142580593","https://openalex.org/W2146573461","https://openalex.org/W2152623715","https://openalex.org/W2153268494","https://openalex.org/W2154350719","https://openalex.org/W2156270929","https://openalex.org/W2156880688","https://openalex.org/W2159479647","https://openalex.org/W2162417400","https://openalex.org/W2165312739","https://openalex.org/W2169456326","https://openalex.org/W2193904848","https://openalex.org/W2205343347","https://openalex.org/W2228482181","https://openalex.org/W2237493771","https://openalex.org/W2262417550","https://openalex.org/W2293880235","https://openalex.org/W2308140312","https://openalex.org/W2346784659","https://openalex.org/W2512299449","https://openalex.org/W2530585732","https://openalex.org/W2552821596","https://openalex.org/W2559953833","https://openalex.org/W2566054465","https://openalex.org/W2567665210","https://openalex.org/W2581437033","https://openalex.org/W2582554428","https://openalex.org/W2591879072","https://openalex.org/W2592207055","https://openalex.org/W2604798118","https://openalex.org/W2604951703","https://openalex.org/W2612185886","https://openalex.org/W2615786037","https://openalex.org/W2761249484","https://openalex.org/W2763513608","https://openalex.org/W2772767466","https://openalex.org/W2788821211","https://openalex.org/W2944168972","https://openalex.org/W2951162249","https://openalex.org/W3005188475","https://openalex.org/W3006194842","https://openalex.org/W3011607634","https://openalex.org/W3011756179","https://openalex.org/W6728671392","https://openalex.org/W6732654142","https://openalex.org/W6736052616","https://openalex.org/W6745003101"],"related_works":["https://openalex.org/W2058984380","https://openalex.org/W2900182103","https://openalex.org/W1988125422","https://openalex.org/W3199602943","https://openalex.org/W4365136234","https://openalex.org/W2547129954","https://openalex.org/W3183769948","https://openalex.org/W2883632755","https://openalex.org/W1924910987","https://openalex.org/W2205411991"],"abstract_inverted_index":{"Long":[0],"noncoding":[1],"RNAs":[2],"(lncRNAs)":[3],"are":[4,10],"a":[5,53],"group":[6],"of":[7,24,26,38,48,56,62,81,94],"transcripts":[8],"that":[9],"longer":[11],"than":[12],"200":[13],"nucleotides":[14],"(nt)":[15],"without":[16],"coding":[17,49,88],"potential.":[18],"Over":[19],"the":[20,46,60,79,84,91,95],"past":[21],"decade,":[22],"tens":[23],"thousands":[25],"novel":[27],"lncRNAs":[28],"have":[29,58],"been":[30],"annotated":[31],"in":[32],"animal":[33],"and":[34,44,90],"plant":[35],"genomes":[36],"because":[37],"advanced":[39],"high-throughput":[40],"RNA":[41],"sequencing":[42],"technologies":[43],"with":[45],"aid":[47],"transcript":[50],"classifiers.":[51],"Further,":[52],"considerable":[54],"number":[55],"reports":[57],"revealed":[59],"existence":[61],"stable,":[63],"functional":[64,92],"small":[65],"peptides":[66,96],"(also":[67],"known":[68],"as":[69],"micropeptides),":[70],"translated":[71],"from":[72],"lncRNAs.":[73],"In":[74],"this":[75],"review,":[76],"we":[77],"discuss":[78],"methods":[80],"lncRNA":[82],"classification,":[83],"investigations":[85],"regarding":[86],"their":[87],"potential":[89],"significance":[93],"they":[97],"encode.":[98]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":40},{"year":2024,"cited_by_count":52},{"year":2023,"cited_by_count":40},{"year":2022,"cited_by_count":53},{"year":2021,"cited_by_count":48},{"year":2020,"cited_by_count":27},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
