{"id":"https://openalex.org/W2801972999","doi":"https://doi.org/10.1093/bib/bby034","title":"Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants","display_name":"Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants","publication_year":2018,"publication_date":"2018-04-04","ids":{"openalex":"https://openalex.org/W2801972999","doi":"https://doi.org/10.1093/bib/bby034","mag":"2801972999","pmid":"https://pubmed.ncbi.nlm.nih.gov/29697740"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby034","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby034","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11449/187774","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014912470","display_name":"Tatianne Negri","orcid":"https://orcid.org/0000-0002-2554-4595"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]},{"id":"https://openalex.org/I3017888287","display_name":"Universidade Nove de Julho","ror":"https://ror.org/005mpbw70","country_code":"BR","type":"education","lineage":["https://openalex.org/I3017888287"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Tatianne da Costa Negri","raw_affiliation_strings":["Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil and Informatics and Knowledge Management Graduate Program, Universidade Nove de Julho, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil and Informatics and Knowledge Management Graduate Program, Universidade Nove de Julho, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I3017888287","https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080234713","display_name":"Wonder Alexandre Luz Alves","orcid":"https://orcid.org/0000-0003-0430-950X"},"institutions":[{"id":"https://openalex.org/I3017888287","display_name":"Universidade Nove de Julho","ror":"https://ror.org/005mpbw70","country_code":"BR","type":"education","lineage":["https://openalex.org/I3017888287"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Wonder Alexandre Luz Alves","raw_affiliation_strings":["Informatics and Knowledge Management Graduate Program, Universidade Nove de Julho, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics and Knowledge Management Graduate Program, Universidade Nove de Julho, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I3017888287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065155873","display_name":"Pedro H. Bugatti","orcid":"https://orcid.org/0000-0001-9421-9254"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Pedro Henrique Bugatti","raw_affiliation_strings":["Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038999508","display_name":"Priscila T. M. Saito","orcid":"https://orcid.org/0000-0002-4870-4766"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Priscila Tiemi Maeda Saito","raw_affiliation_strings":["Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088024942","display_name":"Douglas Silva Domingues","orcid":"https://orcid.org/0000-0002-1290-0853"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]},{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Douglas Silva Domingues","raw_affiliation_strings":["Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil and Department of Botany, Institute of Biosciences, S\u00e3o Paulo State University, UNESP, Rio Claro, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil and Department of Botany, Institute of Biosciences, S\u00e3o Paulo State University, UNESP, Rio Claro, SP, Brazil","institution_ids":["https://openalex.org/I1283613182","https://openalex.org/I879563668"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051358440","display_name":"Alexandre Rossi Paschoal","orcid":"https://orcid.org/0000-0002-8887-0582"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Alexandre Rossi Paschoal","raw_affiliation_strings":["Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-8887-0582","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paran\u00e1, UTFPR, Campus Corn\u00e9lio, Proc\u00f3pio, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5051358440"],"corresponding_institution_ids":["https://openalex.org/I1283613182"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":11.1285,"has_fulltext":false,"cited_by_count":68,"citation_normalized_percentile":{"value":0.98094474,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"20","issue":"2","first_page":"682","last_page":"689"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.5230000019073486,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.5230000019073486,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.376800000667572,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.015799999237060547,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6518132090568542},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5561034083366394},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5052624344825745},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.4873121678829193},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3689999580383301},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36477845907211304},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33782362937927246},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3308226466178894},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32895898818969727},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21643206477165222}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6518132090568542},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5561034083366394},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5052624344825745},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.4873121678829193},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3689999580383301},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36477845907211304},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33782362937927246},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3308226466178894},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32895898818969727},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21643206477165222}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bby034","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bby034","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29697740","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29697740","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:americanae.aecid.es:2037789","is_oa":true,"landing_page_url":"http://hdl.handle.net/11449/187774","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da UNESP","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repositorio.unesp.br:11449/187774","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bib/bby034","pdf_url":null,"source":{"id":"https://openalex.org/S4377196277","display_name":"UNESP Institutional Repository (S\u00e3o Paulo State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I879563668","host_organization_name":"Universidade Estadual Paulista (Unesp)","host_organization_lineage":["https://openalex.org/I879563668"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNESP","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:americanae.aecid.es:2037789","is_oa":true,"landing_page_url":"http://hdl.handle.net/11449/187774","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da UNESP","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G384189166","display_name":null,"funder_award_id":"019/2015","funder_id":"https://openalex.org/F4320322772","funder_display_name":"Funda\u00e7\u00e3o Arauc\u00e1ria"}],"funders":[{"id":"https://openalex.org/F4320322771","display_name":"Secret\u00e1rio de Ci\u00eancia, Tecnologia e Ensino Superior, Governo do Estado de Parana","ror":"https://ror.org/05nyhnc56"},{"id":"https://openalex.org/F4320322772","display_name":"Funda\u00e7\u00e3o Arauc\u00e1ria","ror":"https://ror.org/02r7nkw81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W949300305","https://openalex.org/W1570448133","https://openalex.org/W1897368039","https://openalex.org/W1971946504","https://openalex.org/W1977474073","https://openalex.org/W1991075461","https://openalex.org/W2017337590","https://openalex.org/W2048194168","https://openalex.org/W2075320162","https://openalex.org/W2077721732","https://openalex.org/W2078880053","https://openalex.org/W2079983771","https://openalex.org/W2086561953","https://openalex.org/W2099375330","https://openalex.org/W2102691282","https://openalex.org/W2105349784","https://openalex.org/W2128034264","https://openalex.org/W2129375421","https://openalex.org/W2133990480","https://openalex.org/W2141292707","https://openalex.org/W2154825888","https://openalex.org/W2156125289","https://openalex.org/W2168192523","https://openalex.org/W2224020790","https://openalex.org/W2345364372","https://openalex.org/W2444221476","https://openalex.org/W2474174075","https://openalex.org/W2508146128","https://openalex.org/W2522037954","https://openalex.org/W2587796698","https://openalex.org/W2615786037","https://openalex.org/W2752674194","https://openalex.org/W2762104102","https://openalex.org/W2799061466","https://openalex.org/W3143594093","https://openalex.org/W4249522262"],"related_works":["https://openalex.org/W2147993839","https://openalex.org/W1840103016","https://openalex.org/W54859794","https://openalex.org/W2064941026","https://openalex.org/W2359508303","https://openalex.org/W1983151649","https://openalex.org/W2057323302","https://openalex.org/W1966225171","https://openalex.org/W2028642547","https://openalex.org/W4401590094"],"abstract_inverted_index":{"MOTIVATION:":[0],"Long":[1],"noncoding":[2,9],"RNAs":[3],"(lncRNAs)":[4],"correspond":[5],"to":[6,40,96,115,127],"a":[7,21,34,85,90],"eukaryotic":[8],"RNA":[10],"class":[11],"that":[12,61,64,169],"gained":[13],"great":[14],"attention":[15],"in":[16,29,44,71,99,160,185,188,199],"the":[17,48,72,120,125,129,182,192],"past":[18],"years":[19],"as":[20],"higher":[22],"layer":[23],"of":[24,36,50,181],"regulation":[25],"for":[26,54],"gene":[27],"expression":[28],"cells.":[30],"There":[31],"is,":[32],"however,":[33],"lack":[35],"specific":[37],"computational":[38],"approaches":[39],"reliably":[41],"predict":[42],"lncRNA":[43,118,135,174],"plants,":[45],"which":[46],"contrast":[47],"variety":[49],"prediction":[51],"tools":[52,157],"available":[53],"mammalian":[55],"lncRNAs.":[56],"This":[57],"distinction":[58],"is":[59],"not":[60],"obvious,":[62],"given":[63],"biological":[65],"features":[66,114],"and":[67,79,89,109,131,136,148,165,195,202,205],"mechanisms":[68],"generating":[69],"lncRNAs":[70,98],"cell":[73],"are":[74],"likely":[75],"different":[76],"between":[77],"animals":[78],"plants.":[80,100],"Considering":[81],"this,":[82],"we":[83,167],"present":[84],"machine":[86],"learning":[87],"analysis":[88,105],"classifier":[91],"approach":[92],"called":[93],"RNAplonc":[94,170],"(https://github.com/TatianneNegri/RNAplonc/)":[95],"identify":[97,117],"RESULTS:":[101],"Our":[102],"feature":[103],"selection":[104],"considered":[106],"5468":[107],"features,":[108],"it":[110,133],"used":[111,159],"only":[112],"16":[113],"robustly":[116],"with":[119,134,155,179],"REPTree":[121],"algorithm.":[122],"That":[123],"was":[124],"base":[126],"create":[128],"model":[130],"train":[132],"mRNA":[137],"data":[138],"from":[139,176,191],"five":[140],"plant":[141,177],"species":[142,190],"(thale":[143],"cress,":[144],"cucumber,":[145],"soybean,":[146],"poplar":[147],"Asian":[149],"rice).":[150],"After":[151],"an":[152],"extensive":[153],"comparison":[154],"other":[156],"largely":[158],"plants":[161],"(CPC,":[162],"CPC2,":[163],"CPAT":[164],"PLncPRO),":[166],"found":[168],"produced":[171],"more":[172],"reliable":[173],"predictions":[175],"transcripts":[178],"87.5%":[180],"best":[183],"result":[184],"eight":[186,189],"tests":[187],"GreeNC":[193],"database":[194],"four":[196],"independent":[197],"studies":[198],"monocotyledonous":[200],"(Brachypodium)":[201],"eudicotyledonous":[203],"(Populus":[204],"Gossypium)":[206],"species.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":4}],"updated_date":"2026-06-20T22:02:38.213706","created_date":"2025-10-10T00:00:00"}
