{"id":"https://openalex.org/W2951651936","doi":"https://doi.org/10.1093/bib/bby025","title":"Navigating the disease landscape: knowledge representations for contextualizing molecular signatures","display_name":"Navigating the disease landscape: knowledge representations for contextualizing molecular signatures","publication_year":2018,"publication_date":"2018-04-09","ids":{"openalex":"https://openalex.org/W2951651936","doi":"https://doi.org/10.1093/bib/bby025","mag":"2951651936","pmid":"https://pubmed.ncbi.nlm.nih.gov/29684165"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bby025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby025","pdf_url":"https://academic.oup.com/bib/article-pdf/20/2/609/28833960/bby025.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/20/2/609/28833960/bby025.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068307947","display_name":"Mansoor Saqi","orcid":"https://orcid.org/0000-0003-1222-475X"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mansoor Saqi","raw_affiliation_strings":["Mansoor Saqi Data Science Institute, Imperial College London, UK"],"affiliations":[{"raw_affiliation_string":"Mansoor Saqi Data Science Institute, Imperial College London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068144584","display_name":"Artem Lysenko","orcid":"https://orcid.org/0000-0002-1441-0604"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Artem Lysenko","raw_affiliation_strings":["Artem Lysenko Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan"],"affiliations":[{"raw_affiliation_string":"Artem Lysenko Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045081171","display_name":"Yike Guo","orcid":"https://orcid.org/0000-0002-3075-2161"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yi-Ke Guo","raw_affiliation_strings":["Yi-Ke Guo Data Science Institute, Imperial College London, UK"],"affiliations":[{"raw_affiliation_string":"Yi-Ke Guo Data Science Institute, Imperial College London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049989071","display_name":"Tatsuhiko Tsunoda","orcid":"https://orcid.org/0000-0002-5439-7918"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuhiko Tsunoda","raw_affiliation_strings":["Tatsuhiko Tsunoda Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan CREST, JST, Tokyo, Japan Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Tatsuhiko Tsunoda Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan CREST, JST, Tokyo, Japan Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan","institution_ids":["https://openalex.org/I4210150921","https://openalex.org/I125602781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055008823","display_name":"Charles Auffray","orcid":"https://orcid.org/0000-0003-2226-7411"},"institutions":[{"id":"https://openalex.org/I4387930247","display_name":"European Institute for Systems Biology and Medicine","ror":"https://ror.org/04f927797","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387930247"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Charles Auffray","raw_affiliation_strings":["Charles Auffray European Institute for Systems Biology and Medicine, Lyon, France"],"affiliations":[{"raw_affiliation_string":"Charles Auffray European Institute for Systems Biology and Medicine, Lyon, France","institution_ids":["https://openalex.org/I4387930247"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5068144584"],"corresponding_institution_ids":["https://openalex.org/I4210150921"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.4894,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.83063433,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"2","first_page":"609","last_page":"623"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contextualization","display_name":"Contextualization","score":0.8121359348297119},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6761431097984314},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.611248254776001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5910150408744812},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5757415294647217},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.45580625534057617},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4287637770175934},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3700132966041565},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22867923974990845},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1087353527545929},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10368973016738892}],"concepts":[{"id":"https://openalex.org/C2780712339","wikidata":"https://www.wikidata.org/wiki/Q5165204","display_name":"Contextualization","level":3,"score":0.8121359348297119},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6761431097984314},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.611248254776001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5910150408744812},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5757415294647217},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.45580625534057617},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4287637770175934},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3700132966041565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22867923974990845},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1087353527545929},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10368973016738892},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062346","descriptor_name":"Molecular Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062346","descriptor_name":"Molecular Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062346","descriptor_name":"Molecular Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bby025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby025","pdf_url":"https://academic.oup.com/bib/article-pdf/20/2/609/28833960/bby025.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29684165","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29684165","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6556902","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6556902","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-122800","is_oa":false,"landing_page_url":"http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000473756500005","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bib/bby025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bby025","pdf_url":"https://academic.oup.com/bib/article-pdf/20/2/609/28833960/bby025.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1755812565","display_name":null,"funder_award_id":"Japan Science and Technology Agency","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2521286739","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G2792802287","display_name":null,"funder_award_id":"KAKENHI","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G2920681495","display_name":null,"funder_award_id":"(CREST)","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G3282004645","display_name":null,"funder_award_id":"JPMJCR","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G3459562248","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3722076733","display_name":null,"funder_award_id":"JPMJCR1412","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3971285033","display_name":null,"funder_award_id":"115446","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"},{"id":"https://openalex.org/G3974223279","display_name":null,"funder_award_id":"JPMJCR1412","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4611969921","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4725813319","display_name":"LL(\u30e9\u30f3\u30b2\u30fc\u30b8)\u5b66\u7fd2\u306b\u304a\u3051\u308b\u5b66\u751f\u306e\u5fc3\u7406\u904e\u7a0b\u3068B.G.M(\u80cc\u666f\u97f3\u697d)\u52b9\u679c\u306e\u5b9f\u8a3c\u7684\u7814\u7a76","funder_award_id":"11544","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4827429566","display_name":null,"funder_award_id":"Grant Numbers","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4839539168","display_name":null,"funder_award_id":"115446","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4864544293","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5919204856","display_name":null,"funder_award_id":"17H06307","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6362425154","display_name":null,"funder_award_id":"KAKENHI","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G6504321198","display_name":null,"funder_award_id":"17H06299","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6718509927","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6771030133","display_name":null,"funder_award_id":"17H06307 and 17H06299","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7395296144","display_name":null,"funder_award_id":"Grant-in-Aid for RIKEN IMS","funder_id":"https://openalex.org/F4320335125","funder_display_name":"RIKEN"},{"id":"https://openalex.org/G7485138276","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G7752643416","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8379461101","display_name":null,"funder_award_id":"17H06299","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G8430481527","display_name":null,"funder_award_id":"Number","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320326631","display_name":"Innovative Medicines Initiative","ror":"https://ror.org/019af4n30"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951651936.pdf","grobid_xml":"https://content.openalex.org/works/W2951651936.grobid-xml"},"referenced_works_count":136,"referenced_works":["https://openalex.org/W103049419","https://openalex.org/W216869754","https://openalex.org/W338963578","https://openalex.org/W893557411","https://openalex.org/W1088133221","https://openalex.org/W1487060125","https://openalex.org/W1561585380","https://openalex.org/W1771511297","https://openalex.org/W1871096589","https://openalex.org/W1958105284","https://openalex.org/W1964880353","https://openalex.org/W1966327575","https://openalex.org/W1968358424","https://openalex.org/W1968363067","https://openalex.org/W1968761064","https://openalex.org/W1969709265","https://openalex.org/W1972511676","https://openalex.org/W1979883589","https://openalex.org/W1986672838","https://openalex.org/W1989842786","https://openalex.org/W1990223774","https://openalex.org/W1990347601","https://openalex.org/W1995576455","https://openalex.org/W1997362383","https://openalex.org/W2003003919","https://openalex.org/W2004707197","https://openalex.org/W2006664336","https://openalex.org/W2009405916","https://openalex.org/W2011575208","https://openalex.org/W2015721745","https://openalex.org/W2022330572","https://openalex.org/W2023250031","https://openalex.org/W2025349319","https://openalex.org/W2028689806","https://openalex.org/W2029460685","https://openalex.org/W2033237963","https://openalex.org/W2043515584","https://openalex.org/W2050237494","https://openalex.org/W2053039860","https://openalex.org/W2056782561","https://openalex.org/W2059121736","https://openalex.org/W2059993937","https://openalex.org/W2066830320","https://openalex.org/W2069157810","https://openalex.org/W2071972943","https://openalex.org/W2072871705","https://openalex.org/W2075897300","https://openalex.org/W2079031049","https://openalex.org/W2079341044","https://openalex.org/W2083045667","https://openalex.org/W2084975981","https://openalex.org/W2085860988","https://openalex.org/W2092168208","https://openalex.org/W2096173332","https://openalex.org/W2096541451","https://openalex.org/W2096951189","https://openalex.org/W2097453652","https://openalex.org/W2098005762","https://openalex.org/W2099298756","https://openalex.org/W2103017472","https://openalex.org/W2103151642","https://openalex.org/W2104148262","https://openalex.org/W2105924489","https://openalex.org/W2109070394","https://openalex.org/W2109309713","https://openalex.org/W2113310608","https://openalex.org/W2114363816","https://openalex.org/W2116238734","https://openalex.org/W2116956896","https://openalex.org/W2121531562","https://openalex.org/W2121652122","https://openalex.org/W2126997165","https://openalex.org/W2131161884","https://openalex.org/W2131285447","https://openalex.org/W2132623845","https://openalex.org/W2134396625","https://openalex.org/W2136145666","https://openalex.org/W2138275182","https://openalex.org/W2140611297","https://openalex.org/W2143965041","https://openalex.org/W2144086069","https://openalex.org/W2146249493","https://openalex.org/W2147018385","https://openalex.org/W2147714160","https://openalex.org/W2148499186","https://openalex.org/W2150841057","https://openalex.org/W2150908245","https://openalex.org/W2154654747","https://openalex.org/W2155142785","https://openalex.org/W2156046391","https://openalex.org/W2156660472","https://openalex.org/W2156695919","https://openalex.org/W2161062388","https://openalex.org/W2162143298","https://openalex.org/W2164092307","https://openalex.org/W2171374484","https://openalex.org/W2188040004","https://openalex.org/W2196234005","https://openalex.org/W2223752691","https://openalex.org/W2256388145","https://openalex.org/W2273267066","https://openalex.org/W2273647512","https://openalex.org/W2288713920","https://openalex.org/W2297993206","https://openalex.org/W2320656788","https://openalex.org/W2393502053","https://openalex.org/W2394910725","https://openalex.org/W2441924832","https://openalex.org/W2461142535","https://openalex.org/W2496792076","https://openalex.org/W2514231286","https://openalex.org/W2528662265","https://openalex.org/W2564387948","https://openalex.org/W2564769250","https://openalex.org/W2567042681","https://openalex.org/W2567262548","https://openalex.org/W2605218377","https://openalex.org/W2721469237","https://openalex.org/W2767544505","https://openalex.org/W2912486915","https://openalex.org/W2949311246","https://openalex.org/W2976838156","https://openalex.org/W3103589660","https://openalex.org/W3144526075","https://openalex.org/W4211054902","https://openalex.org/W4232046272","https://openalex.org/W4239696231","https://openalex.org/W4252232449","https://openalex.org/W4256027756","https://openalex.org/W6604217369","https://openalex.org/W6681982075","https://openalex.org/W6682420895","https://openalex.org/W6687306466","https://openalex.org/W6711851870","https://openalex.org/W6736127966","https://openalex.org/W7073635943"],"related_works":["https://openalex.org/W1687432146","https://openalex.org/W1591874556","https://openalex.org/W3216994056","https://openalex.org/W2185608106","https://openalex.org/W3046258185","https://openalex.org/W1548083239","https://openalex.org/W2268232908","https://openalex.org/W205610463","https://openalex.org/W2893240344","https://openalex.org/W4385272430"],"abstract_inverted_index":{"Large":[0],"amounts":[1],"of":[2,15,24,47,51,69,98,100,120],"data":[3],"emerging":[4],"from":[5],"experiments":[6],"in":[7,72],"molecular":[8,16,70,81],"medicine":[9],"are":[10],"leading":[11],"to":[12,64],"the":[13,34,45,66,96],"identification":[14],"signatures":[17],"associated":[18,37],"with":[19,38,109],"disease":[20],"subtypes.":[21],"The":[22],"contextualization":[23],"these":[25,101],"patterns":[26],"is":[27],"important":[28],"for":[29,117],"obtaining":[30],"mechanistic":[31],"insight":[32],"into":[33],"aberrant":[35],"processes":[36],"a":[39],"disease,":[40],"and":[41,85,113],"this":[42,54,118],"typically":[43],"involves":[44],"integration":[46],"multiple":[48],"heterogeneous":[49],"types":[50],"data.":[52],"In":[53],"review,":[55],"we":[56],"discuss":[57,95],"knowledge":[58,92],"representations":[59],"that":[60,87],"can":[61,106],"be":[62,107],"useful":[63],"explore":[65],"biological":[67,89],"context":[68],"signatures,":[71],"particular":[73],"three":[74],"main":[75],"approaches,":[76,80],"namely,":[77],"pathway":[78],"mapping":[79],"network":[82],"centric":[83],"approaches":[84,86],"represent":[88],"statements":[90],"as":[91],"graphs.":[93],"We":[94],"utility":[97],"each":[99],"paradigms,":[102],"illustrate":[103],"how":[104],"they":[105],"leveraged":[108],"selected":[110],"practical":[111],"examples":[112],"identify":[114],"ongoing":[115],"challenges":[116],"field":[119],"research.":[121]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
