{"id":"https://openalex.org/W2763483475","doi":"https://doi.org/10.1093/bib/bbx132","title":"Prediction of protein\u2013protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.)","display_name":"Prediction of protein\u2013protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.)","publication_year":2017,"publication_date":"2017-09-25","ids":{"openalex":"https://openalex.org/W2763483475","doi":"https://doi.org/10.1093/bib/bbx132","mag":"2763483475","pmid":"https://pubmed.ncbi.nlm.nih.gov/29040362"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx132","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx132","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055458077","display_name":"Shiwei Ma","orcid":"https://orcid.org/0000-0003-4293-7195"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiwei Ma","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051328215","display_name":"Qi Song","orcid":"https://orcid.org/0000-0001-5420-4031"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Song","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026955133","display_name":"Tao Huan","orcid":"https://orcid.org/0000-0001-6295-2435"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Tao","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102718909","display_name":"Andrew Harrison","orcid":"https://orcid.org/0000-0002-7849-4640"},"institutions":[{"id":"https://openalex.org/I110002522","display_name":"University of Essex","ror":"https://ror.org/02nkf1q06","country_code":"GB","type":"education","lineage":["https://openalex.org/I110002522"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Harrison","raw_affiliation_strings":["Department of Mathematical Sciences, University of Essex, UK"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, University of Essex, UK","institution_ids":["https://openalex.org/I110002522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693337","display_name":"Shaobo Wang","orcid":"https://orcid.org/0000-0003-0481-707X"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaobo Wang","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100431895","display_name":"Wei Liu","orcid":"https://orcid.org/0000-0002-9302-8170"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Liu","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039727044","display_name":"Shoukai Lin","orcid":"https://orcid.org/0000-0003-0073-4875"},"institutions":[{"id":"https://openalex.org/I64449678","display_name":"Putian University","ror":"https://ror.org/00jmsxk74","country_code":"CN","type":"education","lineage":["https://openalex.org/I64449678"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shoukai Lin","raw_affiliation_strings":["Fujian Provincial Key Laboratory of Ecology-toxicological Effects and Control for Emerging Contaminants, Putian University"],"affiliations":[{"raw_affiliation_string":"Fujian Provincial Key Laboratory of Ecology-toxicological Effects and Control for Emerging Contaminants, Putian University","institution_ids":["https://openalex.org/I64449678"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031348514","display_name":"Ziding Zhang","orcid":"https://orcid.org/0000-0002-9296-571X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ziding Zhang","raw_affiliation_strings":["College of Biological Sciences, China Agriculture University, China"],"affiliations":[{"raw_affiliation_string":"College of Biological Sciences, China Agriculture University, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052471587","display_name":"Yufang Ai","orcid":null},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yufang Ai","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101723430","display_name":"Huaqin He","orcid":"https://orcid.org/0000-0002-1951-4867"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huaqin He","raw_affiliation_strings":["College of Life Sciences, Fujian Agriculture and Forestry University, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Fujian Agriculture and Forestry University, China","institution_ids":["https://openalex.org/I61057504"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5052471587","https://openalex.org/A5101723430"],"corresponding_institution_ids":["https://openalex.org/I61057504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.5341,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.91055654,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"20","issue":"2","first_page":"448","last_page":"456"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oryza-sativa","display_name":"Oryza sativa","score":0.8327478766441345},{"id":"https://openalex.org/keywords/fungus","display_name":"Fungus","score":0.7565689086914062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6821266412734985},{"id":"https://openalex.org/keywords/magnaporthe-grisea","display_name":"Magnaporthe grisea","score":0.6683754920959473},{"id":"https://openalex.org/keywords/oryza","display_name":"Oryza","score":0.434017539024353},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.39932775497436523},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.32967936992645264},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31984999775886536},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21138757467269897}],"concepts":[{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.8327478766441345},{"id":"https://openalex.org/C2779678110","wikidata":"https://www.wikidata.org/wiki/Q764","display_name":"Fungus","level":2,"score":0.7565689086914062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6821266412734985},{"id":"https://openalex.org/C2776545026","wikidata":"https://www.wikidata.org/wiki/Q2697099","display_name":"Magnaporthe grisea","level":4,"score":0.6683754920959473},{"id":"https://openalex.org/C2777923347","wikidata":"https://www.wikidata.org/wiki/Q690633","display_name":"Oryza","level":4,"score":0.434017539024353},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.39932775497436523},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.32967936992645264},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31984999775886536},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21138757467269897}],"mesh":[{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020082","descriptor_name":"Magnaporthe","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020082","descriptor_name":"Magnaporthe","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020082","descriptor_name":"Magnaporthe","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020082","descriptor_name":"Magnaporthe","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D020082","descriptor_name":"Magnaporthe","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D020082","descriptor_name":"Magnaporthe","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbx132","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx132","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29040362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29040362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5405067706","display_name":null,"funder_award_id":"CXZX2017132","funder_id":"https://openalex.org/F4320325353","funder_display_name":"Fujian Agriculture and Forestry University"},{"id":"https://openalex.org/G5419541725","display_name":null,"funder_award_id":"CXZX2017303","funder_id":"https://openalex.org/F4320325353","funder_display_name":"Fujian Agriculture and Forestry University"}],"funders":[{"id":"https://openalex.org/F4320325353","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W107168346","https://openalex.org/W1481246388","https://openalex.org/W1532212161","https://openalex.org/W1965995197","https://openalex.org/W1977927254","https://openalex.org/W1978893949","https://openalex.org/W1981218481","https://openalex.org/W1982267716","https://openalex.org/W1983079600","https://openalex.org/W1998671658","https://openalex.org/W2002640002","https://openalex.org/W2003079893","https://openalex.org/W2006191501","https://openalex.org/W2007737173","https://openalex.org/W2021240905","https://openalex.org/W2022472106","https://openalex.org/W2026864448","https://openalex.org/W2042500831","https://openalex.org/W2050280736","https://openalex.org/W2054747421","https://openalex.org/W2060414500","https://openalex.org/W2060501224","https://openalex.org/W2065806863","https://openalex.org/W2072934530","https://openalex.org/W2083825307","https://openalex.org/W2083978969","https://openalex.org/W2085133952","https://openalex.org/W2095867585","https://openalex.org/W2096864392","https://openalex.org/W2099426927","https://openalex.org/W2100228443","https://openalex.org/W2105014712","https://openalex.org/W2105031411","https://openalex.org/W2105914119","https://openalex.org/W2107811186","https://openalex.org/W2108780882","https://openalex.org/W2110643324","https://openalex.org/W2110768663","https://openalex.org/W2111050364","https://openalex.org/W2112198778","https://openalex.org/W2115048111","https://openalex.org/W2123208777","https://openalex.org/W2126478262","https://openalex.org/W2130687290","https://openalex.org/W2131581472","https://openalex.org/W2134197776","https://openalex.org/W2138098955","https://openalex.org/W2142510328","https://openalex.org/W2144656637","https://openalex.org/W2145633515","https://openalex.org/W2150318080","https://openalex.org/W2152770371","https://openalex.org/W2155142785","https://openalex.org/W2157346087","https://openalex.org/W2158173168","https://openalex.org/W2158698691","https://openalex.org/W2159788203","https://openalex.org/W2161746138","https://openalex.org/W2162515800","https://openalex.org/W2165253681","https://openalex.org/W2166344835","https://openalex.org/W2514430732","https://openalex.org/W2560844000","https://openalex.org/W2599750594","https://openalex.org/W2898057000","https://openalex.org/W4254712992","https://openalex.org/W6628708307","https://openalex.org/W6665738843","https://openalex.org/W6684051491","https://openalex.org/W6735010770"],"related_works":["https://openalex.org/W1522942112","https://openalex.org/W4251632703","https://openalex.org/W2377568859","https://openalex.org/W4233851715","https://openalex.org/W4235050452","https://openalex.org/W1992256783","https://openalex.org/W2516616894","https://openalex.org/W149821084","https://openalex.org/W2782056425","https://openalex.org/W2362924167"],"abstract_inverted_index":{"Rice":[0],"blast":[1,31,57,112,150,180,243],"disease":[2,32],"caused":[3],"by":[4,63,100,149,216,226],"the":[5,14,19,108,117,144,171,177,191,210,232,240],"fungus":[6,58,75,113,151,172,227,244],"Magnaporthe":[7],"grisea":[8],"(M.":[9],"grisea)":[10],"is":[11],"one":[12],"of":[13,82,111,179,193,242],"most":[15],"serious":[16],"diseases":[17],"for":[18,91],"cultivated":[20],"rice":[21,30,41,79,129,168,187,200,214],"Oryza":[22],"sativa":[23],"(O.":[24],"sativa).":[25],"A":[26],"key":[27],"factor":[28],"causing":[29],"and":[33,42,59,65,77,88,97,134,143,162,199,228],"defense":[34],"might":[35],"be":[36],"protein-protein":[37],"interactions":[38],"(PPIs)":[39],"between":[40,56,73],"fungus.":[43,181],"In":[44,230],"this":[45,235],"research,":[46],"we":[47,68],"have":[48],"developed":[49],"a":[50],"computational":[51],"pipeline":[52],"to":[53,176,190],"predict":[54],"PPIs":[55,72,93,119,153],"rice.":[60],"After":[61],"cross-prediction":[62],"interolog-based":[64],"domain-based":[66],"method,":[67],"achieved":[69],"532":[70],"potential":[71],"27":[74],"proteins":[76,173],"236":[78],"proteins.":[80],"Accuracy":[81],"jackknife":[83],"test,":[84],"10-fold":[85],"cross-validation":[86],"test":[87,90],"independent":[89],"these":[92,217],"were":[94,114,154,203],"90.43,":[95],"93.85":[96],"84.67%,":[98],"respectively,":[99],"using":[101],"support":[102],"vector":[103],"machine":[104],"classification":[105],"method.":[106],"Meanwhile,":[107],"pathogenic":[109],"genes":[110],"enriched":[115],"in":[116,167,174,186,188,213,234],"predicted":[118],"network":[120,131],"when":[121],"compared":[122],"with":[123,139,170],"1000":[124],"random":[125],"interaction":[126],"networks.":[127],"The":[128,156,182,205],"regulatory":[130],"was":[132,209,224],"downloaded":[133],"divided":[135],"into":[136,239],"228":[137],"subnetworks":[138,147],"over":[140],"six":[141],"nodes,":[142],"top":[145],"seven":[146],"affected":[148],"through":[152],"investigated.":[155],"results":[157,233],"indicated":[158],"that":[159],"34":[160],"upregulated":[161],"12":[163],"downregulated":[164],"master":[165,184],"regulators":[166,185],"interacting":[169],"response":[175,189],"infection":[178,192],"common":[183,211],"M.":[194],"grisea,":[195],"Xanthomonas":[196],"oryzae":[197],"pv.oryzae":[198],"stripe":[201],"virus":[202],"analyzed.":[204],"ubiquitin":[206],"proteasome":[207],"pathway":[208,212,223],"regulated":[215],"three":[218],"pathogens,":[219],"while":[220],"apoptosis":[221],"signaling":[222],"induced":[225],"bacteria.":[229],"summary,":[231],"article":[236],"provide":[237],"insight":[238],"process":[241],"infection.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-23T07:41:27.035349","created_date":"2025-10-10T00:00:00"}