{"id":"https://openalex.org/W2758005814","doi":"https://doi.org/10.1093/bib/bbx120","title":"A review of methods and databases for metagenomic classification and assembly","display_name":"A review of methods and databases for metagenomic classification and assembly","publication_year":2017,"publication_date":"2017-08-26","ids":{"openalex":"https://openalex.org/W2758005814","doi":"https://doi.org/10.1093/bib/bbx120","mag":"2758005814","pmid":"https://pubmed.ncbi.nlm.nih.gov/29028872"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx120","pdf_url":"https://academic.oup.com/bib/article-pdf/20/4/1125/30119686/bbx120.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/20/4/1125/30119686/bbx120.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033112863","display_name":"Florian P. Breitwieser","orcid":"https://orcid.org/0000-0001-6192-0853"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I2802946424","display_name":"Johns Hopkins University Applied Physics Laboratory","ror":"https://ror.org/029pp9z10","country_code":"US","type":"facility","lineage":["https://openalex.org/I145311948","https://openalex.org/I2802946424"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Florian P Breitwieser","raw_affiliation_strings":["Center for Computational Biology at Johns Hopkins University","Professor of Biomedical Engineering, Computer Science and Biostatistics at Johns Hopkins University","Computational Biology at Johns Hopkins School of Medicine","Center for Computational Biology, Johns Hopkins University, 1900 E. Monument St., Baltimore, MD, 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology at Johns Hopkins University","institution_ids":["https://openalex.org/I2802946424","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Professor of Biomedical Engineering, Computer Science and Biostatistics at Johns Hopkins University","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]},{"raw_affiliation_string":"Computational Biology at Johns Hopkins School of Medicine","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948","https://openalex.org/I2802946424"]},{"raw_affiliation_string":"Center for Computational Biology, Johns Hopkins University, 1900 E. Monument St., Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055057550","display_name":"Jennifer Lu","orcid":"https://orcid.org/0000-0001-9167-2002"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I2802946424","display_name":"Johns Hopkins University Applied Physics Laboratory","ror":"https://ror.org/029pp9z10","country_code":"US","type":"facility","lineage":["https://openalex.org/I145311948","https://openalex.org/I2802946424"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Lu","raw_affiliation_strings":["Center for Computational Biology, Johns Hopkins University, 1900 E. Monument St., Baltimore, MD, 21205, USA","Professor of Biomedical Engineering, Computer Science and Biostatistics at Johns Hopkins University","Center for Computational Biology at Johns Hopkins University","Computational Biology at Johns Hopkins School of Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Johns Hopkins University, 1900 E. Monument St., Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Professor of Biomedical Engineering, Computer Science and Biostatistics at Johns Hopkins University","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]},{"raw_affiliation_string":"Center for Computational Biology at Johns Hopkins University","institution_ids":["https://openalex.org/I2802946424","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Computational Biology at Johns Hopkins School of Medicine","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948","https://openalex.org/I2802946424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010384159","display_name":"Steven L. Salzberg","orcid":"https://orcid.org/0000-0002-8859-7432"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I2802946424","display_name":"Johns Hopkins University Applied Physics Laboratory","ror":"https://ror.org/029pp9z10","country_code":"US","type":"facility","lineage":["https://openalex.org/I145311948","https://openalex.org/I2802946424"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steven L Salzberg","raw_affiliation_strings":["Center for Computational Biology, Johns Hopkins University, 1900 E. Monument St., Baltimore, MD, 21205, USA","Professor of Biomedical Engineering, Computer Science and Biostatistics at Johns Hopkins University","Center for Computational Biology at Johns Hopkins University","Computational Biology at Johns Hopkins School of Medicine"],"raw_orcid":"https://orcid.org/0000-0002-8859-7432","affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Johns Hopkins University, 1900 E. Monument St., Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Professor of Biomedical Engineering, Computer Science and Biostatistics at Johns Hopkins University","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]},{"raw_affiliation_string":"Center for Computational Biology at Johns Hopkins University","institution_ids":["https://openalex.org/I2802946424","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Computational Biology at Johns Hopkins School of Medicine","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948","https://openalex.org/I2802946424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010384159"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436","https://openalex.org/I2802946424"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":19.765,"has_fulltext":true,"cited_by_count":597,"citation_normalized_percentile":{"value":0.99637865,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"20","issue":"4","first_page":"1125","last_page":"1136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7512938976287842},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6116069555282593},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5855430364608765},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4150782823562622},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36441415548324585},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3522307276725769},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14290925860404968}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7512938976287842},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6116069555282593},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5855430364608765},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4150782823562622},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36441415548324585},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3522307276725769},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14290925860404968},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbx120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx120","pdf_url":"https://academic.oup.com/bib/article-pdf/20/4/1125/30119686/bbx120.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29028872","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29028872","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6781581","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6781581","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx120","pdf_url":"https://academic.oup.com/bib/article-pdf/20/4/1125/30119686/bbx120.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1582564464","display_name":null,"funder_award_id":"R01 GM083873","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1914338789","display_name":null,"funder_award_id":"R01-HG006677","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1948625268","display_name":null,"funder_award_id":"W911NF-1410490","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4686869152","display_name":null,"funder_award_id":"R01-GM083873","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G632460639","display_name":null,"funder_award_id":"HG006677","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7452299184","display_name":null,"funder_award_id":"W911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G7929101816","display_name":null,"funder_award_id":"R01 HG006677","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G8987315755","display_name":null,"funder_award_id":"W911NF-1410490","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2758005814.pdf","grobid_xml":"https://content.openalex.org/works/W2758005814.grobid-xml"},"referenced_works_count":170,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W176296285","https://openalex.org/W1496933752","https://openalex.org/W1512978277","https://openalex.org/W1528357204","https://openalex.org/W1584790813","https://openalex.org/W1703384511","https://openalex.org/W1874606962","https://openalex.org/W1878521557","https://openalex.org/W1912338927","https://openalex.org/W1954100204","https://openalex.org/W1958058086","https://openalex.org/W1968339870","https://openalex.org/W1968828904","https://openalex.org/W1979966476","https://openalex.org/W1982579644","https://openalex.org/W1985657529","https://openalex.org/W1988925586","https://openalex.org/W1997673861","https://openalex.org/W2000040814","https://openalex.org/W2000771470","https://openalex.org/W2001561488","https://openalex.org/W2003347102","https://openalex.org/W2010002522","https://openalex.org/W2010361633","https://openalex.org/W2014960974","https://openalex.org/W2036897871","https://openalex.org/W2036972714","https://openalex.org/W2045204781","https://openalex.org/W2045449780","https://openalex.org/W2053562164","https://openalex.org/W2055043387","https://openalex.org/W2056279562","https://openalex.org/W2064334669","https://openalex.org/W2072970694","https://openalex.org/W2073000795","https://openalex.org/W2082203850","https://openalex.org/W2085631282","https://openalex.org/W2088833470","https://openalex.org/W2089859322","https://openalex.org/W2091328482","https://openalex.org/W2095685450","https://openalex.org/W2097477547","https://openalex.org/W2098386120","https://openalex.org/W2100561213","https://openalex.org/W2103441770","https://openalex.org/W2103901746","https://openalex.org/W2105067980","https://openalex.org/W2106071673","https://openalex.org/W2107594154","https://openalex.org/W2108718991","https://openalex.org/W2108982334","https://openalex.org/W2109848222","https://openalex.org/W2110375946","https://openalex.org/W2112364185","https://openalex.org/W2113679889","https://openalex.org/W2113925621","https://openalex.org/W2116410071","https://openalex.org/W2116412478","https://openalex.org/W2116895571","https://openalex.org/W2120141270","https://openalex.org/W2120902911","https://openalex.org/W2124927293","https://openalex.org/W2128591967","https://openalex.org/W2129895984","https://openalex.org/W2131271579","https://openalex.org/W2132069633","https://openalex.org/W2132580017","https://openalex.org/W2134751812","https://openalex.org/W2135515858","https://openalex.org/W2137896807","https://openalex.org/W2138122982","https://openalex.org/W2141202455","https://openalex.org/W2141920662","https://openalex.org/W2142678031","https://openalex.org/W2142678478","https://openalex.org/W2143420371","https://openalex.org/W2145044321","https://openalex.org/W2146281049","https://openalex.org/W2146988500","https://openalex.org/W2150208009","https://openalex.org/W2151277589","https://openalex.org/W2152375430","https://openalex.org/W2155628349","https://openalex.org/W2156125289","https://openalex.org/W2158013774","https://openalex.org/W2159954944","https://openalex.org/W2160209604","https://openalex.org/W2160414677","https://openalex.org/W2160969485","https://openalex.org/W2162039942","https://openalex.org/W2162758337","https://openalex.org/W2165770381","https://openalex.org/W2167583584","https://openalex.org/W2169899471","https://openalex.org/W2170486072","https://openalex.org/W2170551349","https://openalex.org/W2171378643","https://openalex.org/W2175526948","https://openalex.org/W2195358106","https://openalex.org/W2224098151","https://openalex.org/W2239696860","https://openalex.org/W2260059978","https://openalex.org/W2273522830","https://openalex.org/W2281657072","https://openalex.org/W2291091413","https://openalex.org/W2294353708","https://openalex.org/W2305300412","https://openalex.org/W2307206101","https://openalex.org/W2317724253","https://openalex.org/W2323326409","https://openalex.org/W2333481637","https://openalex.org/W2337747100","https://openalex.org/W2340423564","https://openalex.org/W2341364667","https://openalex.org/W2345658906","https://openalex.org/W2401404581","https://openalex.org/W2403288892","https://openalex.org/W2418565353","https://openalex.org/W2419984687","https://openalex.org/W2427274663","https://openalex.org/W2432815617","https://openalex.org/W2462303459","https://openalex.org/W2465681871","https://openalex.org/W2469762261","https://openalex.org/W2470385432","https://openalex.org/W2477408078","https://openalex.org/W2481917454","https://openalex.org/W2514983714","https://openalex.org/W2519890620","https://openalex.org/W2559429800","https://openalex.org/W2559814226","https://openalex.org/W2559838906","https://openalex.org/W2562388580","https://openalex.org/W2562468253","https://openalex.org/W2568701961","https://openalex.org/W2570945670","https://openalex.org/W2572263783","https://openalex.org/W2578149194","https://openalex.org/W2578210650","https://openalex.org/W2586360538","https://openalex.org/W2587565773","https://openalex.org/W2599417231","https://openalex.org/W2603346833","https://openalex.org/W2607313420","https://openalex.org/W2612505479","https://openalex.org/W2621803930","https://openalex.org/W2726960688","https://openalex.org/W2773939681","https://openalex.org/W2949351818","https://openalex.org/W2950150251","https://openalex.org/W2951160681","https://openalex.org/W2951176108","https://openalex.org/W2963629592","https://openalex.org/W3102798896","https://openalex.org/W3123195831","https://openalex.org/W3202462308","https://openalex.org/W4232838911","https://openalex.org/W4237091274","https://openalex.org/W4246954632","https://openalex.org/W4247009032","https://openalex.org/W4247053599","https://openalex.org/W4252553099","https://openalex.org/W4292295412","https://openalex.org/W6695463692","https://openalex.org/W6717372020","https://openalex.org/W6730819202","https://openalex.org/W6732185913","https://openalex.org/W6740946733","https://openalex.org/W7058403925"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W4255657129"],"abstract_inverted_index":{"Microbiome":[0],"research":[1],"has":[2,76],"grown":[3],"rapidly":[4],"over":[5],"the":[6,30,49,56,67],"past":[7],"decade,":[8],"with":[9],"a":[10,77,85],"proliferation":[11],"of":[12,20,29,33,48,55,69],"new":[13],"methods":[14,34,57],"that":[15],"seek":[16],"to":[17,83],"make":[18],"sense":[19],"large,":[21],"complex":[22],"data":[23],"sets.":[24],"Here,":[25],"we":[26,45,64],"survey":[27],"two":[28],"primary":[31],"types":[32],"for":[35],"analyzing":[36],"microbiome":[37,86],"data:":[38],"read":[39],"classification":[40],"and":[41,44,63,72],"metagenomic":[42],"assembly,":[43],"review":[46],"some":[47],"challenges":[50],"facing":[51],"these":[52,70],"methods.":[53],"All":[54],"rely":[58],"on":[59,80],"public":[60],"genome":[61],"databases,":[62],"also":[65],"discuss":[66],"content":[68],"databases":[71],"how":[73],"their":[74],"quality":[75],"direct":[78],"impact":[79],"our":[81],"ability":[82],"interpret":[84],"sample.":[87]},"counts_by_year":[{"year":2026,"cited_by_count":18},{"year":2025,"cited_by_count":59},{"year":2024,"cited_by_count":73},{"year":2023,"cited_by_count":76},{"year":2022,"cited_by_count":108},{"year":2021,"cited_by_count":87},{"year":2020,"cited_by_count":98},{"year":2019,"cited_by_count":51},{"year":2018,"cited_by_count":24},{"year":2017,"cited_by_count":3}],"updated_date":"2026-04-24T08:23:43.765630","created_date":"2025-10-10T00:00:00"}
