{"id":"https://openalex.org/W2752064279","doi":"https://doi.org/10.1093/bib/bbx102","title":"Federation in genomics pipelines: techniques and challenges","display_name":"Federation in genomics pipelines: techniques and challenges","publication_year":2017,"publication_date":"2017-07-25","ids":{"openalex":"https://openalex.org/W2752064279","doi":"https://doi.org/10.1093/bib/bbx102","mag":"2752064279","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968781"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx102","pdf_url":"https://academic.oup.com/bib/article-pdf/20/1/235/27689595/bbx102.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/20/1/235/27689595/bbx102.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055585728","display_name":"Somali Chaterji","orcid":"https://orcid.org/0000-0002-3651-6362"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Somali Chaterji","raw_affiliation_strings":["Computer Science, Purdue University, Indiana, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science, Purdue University, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110241075","display_name":"Jinkyu Koo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jinkyu Koo","raw_affiliation_strings":["Electrical and Computer Engineering, Purdue University, Indiana, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Purdue University, Indiana, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044851062","display_name":"Ninghui Li","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ninghui Li","raw_affiliation_strings":["Computer Science, Purdue University, Indiana, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science, Purdue University, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086419862","display_name":"Folker Meyer","orcid":"https://orcid.org/0000-0003-1112-2284"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Folker Meyer","raw_affiliation_strings":["Argonne National Laboratory, Mathematics and Computer Science Division, Illinois, USA","University of Chicago Medical School, Illinois, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Mathematics and Computer Science Division, Illinois, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"University of Chicago Medical School, Illinois, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019202832","display_name":"Ananth Grama","orcid":"https://orcid.org/0000-0002-9378-9244"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananth Grama","raw_affiliation_strings":["Computer Science, Purdue University, Indiana, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science, Purdue University, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047310442","display_name":"Saurabh Bagchi","orcid":"https://orcid.org/0000-0002-4239-5632"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Saurabh Bagchi","raw_affiliation_strings":["Electrical and Computer Engineering, Purdue University, Indiana, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Purdue University, Indiana, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5055585728"],"corresponding_institution_ids":["https://openalex.org/I219193219"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.7904,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.85356149,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"235","last_page":"244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6454848647117615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6178648471832275},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5935094356536865},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.537510335445404},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5245506763458252},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.46722376346588135},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4266376793384552},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.322742760181427},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22516977787017822},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1512158215045929},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12038609385490417}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6454848647117615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6178648471832275},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5935094356536865},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.537510335445404},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5245506763458252},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.46722376346588135},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4266376793384552},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.322742760181427},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22516977787017822},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1512158215045929},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12038609385490417},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030661","descriptor_name":"Genetic Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030661","descriptor_name":"Genetic Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030661","descriptor_name":"Genetic Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030661","descriptor_name":"Genetic Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbx102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx102","pdf_url":"https://academic.oup.com/bib/article-pdf/20/1/235/27689595/bbx102.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968781","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968781","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5356417","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6357554","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:osti.gov:1542865","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1542865","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6357554","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6357554","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx102","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx102","pdf_url":"https://academic.oup.com/bib/article-pdf/20/1/235/27689595/bbx102.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1062511346","display_name":null,"funder_award_id":"5R01AI114814","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G135097417","display_name":null,"funder_award_id":"CNS-1527262","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4646745915","display_name":null,"funder_award_id":"CNS-1718637","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G999943547","display_name":null,"funder_award_id":"1R01AI123037","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2752064279.pdf","grobid_xml":"https://content.openalex.org/works/W2752064279.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1601184778","https://openalex.org/W1968752677","https://openalex.org/W1981932091","https://openalex.org/W1989348205","https://openalex.org/W1990503647","https://openalex.org/W1993116423","https://openalex.org/W2022542865","https://openalex.org/W2025383314","https://openalex.org/W2045204781","https://openalex.org/W2057576485","https://openalex.org/W2069689025","https://openalex.org/W2071511328","https://openalex.org/W2096803423","https://openalex.org/W2097606916","https://openalex.org/W2099907571","https://openalex.org/W2104846587","https://openalex.org/W2107041969","https://openalex.org/W2107927452","https://openalex.org/W2114843025","https://openalex.org/W2119067110","https://openalex.org/W2124351063","https://openalex.org/W2125062675","https://openalex.org/W2134167315","https://openalex.org/W2136145671","https://openalex.org/W2159024459","https://openalex.org/W2165157425","https://openalex.org/W2166658587","https://openalex.org/W2169945698","https://openalex.org/W2170551349","https://openalex.org/W2190655222","https://openalex.org/W2322977835","https://openalex.org/W2412192467","https://openalex.org/W2481972981","https://openalex.org/W2495716725","https://openalex.org/W2497040433","https://openalex.org/W2911684380","https://openalex.org/W2915032613","https://openalex.org/W2953168871","https://openalex.org/W4233928114","https://openalex.org/W4242679227"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W3044162010"],"abstract_inverted_index":{"Federation":[0,33],"is":[1,67,102,108,148,221],"a":[2,18,41,157,175,205],"popular":[3,82,142],"concept":[4],"in":[5,37,103,216],"building":[6],"distributed":[7],"cyberinfrastructures,":[8],"whereby":[9],"computational":[10,72,197],"resources":[11,73],"are":[12,167],"provided":[13],"by":[14,235],"multiple":[15,31],"organizations":[16],"through":[17,134,156],"unified":[19],"portal,":[20],"decreasing":[21],"the":[22,111,114,122,140,196,209,237],"complexity":[23],"of":[24,46,113,163,232],"moving":[25],"data":[26,87,115,123],"back":[27],"and":[28,54,78,89,96,105,132,208,240],"forth":[29],"among":[30],"organizations.":[32],"has":[34],"been":[35],"used":[36,177],"bioinformatics":[38,83,206,233],"only":[39],"to":[40,69,80,120,181,228,244,246],"limited":[42],"extent,":[43],"namely,":[44],"federation":[45,184,231],"datastores,":[47],"e.g.":[48],"SBGrid":[49],"Consortium":[50],"for":[51,59,203],"structural":[52],"biology":[53],"Gene":[55],"Expression":[56],"Omnibus":[57],"(GEO)":[58],"functional":[60],"genomics.":[61],"Here,":[62],"we":[63,99,166,179,194,214],"posit":[64],"that":[65,98,110,199,213,223],"it":[66,147],"important":[68],"federate":[70],"both":[71],"(CPU,":[74],"GPU,":[75],"FPGA,":[76],"etc.)":[77],"datastores":[79],"support":[81,247],"portals,":[84],"with":[85,137],"fast-increasing":[86],"volumes":[88],"increasing":[90],"processing":[91,112],"requirements.":[92],"A":[93],"prime":[94],"example,":[95],"one":[97],"discuss":[100],"here,":[101],"genomics":[104],"metagenomics.":[106],"It":[107,220],"critical":[109],"be":[116,201],"done":[117],"without":[118,185],"having":[119],"transport":[121],"across":[124],"large":[125],"network":[126],"distances.":[127],"We":[128],"exemplify":[129],"our":[130,135,224],"design":[131],"development":[133],"experience":[136],"metagenomics-RAST":[138],"(MG-RAST),":[139],"most":[141],"metagenomics":[143],"analysis":[144],"pipeline.":[145],"Currently,":[146],"hosted":[149],"completely":[150],"at":[151],"Argonne":[152],"National":[153,161],"Laboratory.":[154],"However,":[155],"recently":[158],"started":[159],"collaborative":[160],"Institutes":[162],"Health":[164],"project,":[165],"taking":[168],"steps":[169,238],"toward":[170,183],"federating":[171,204,217],"this":[172,192],"infrastructure.":[173],"Being":[174],"widely":[176],"resource,":[178],"have":[180],"move":[182],"disrupting":[186],"50":[187],"K":[188],"annual":[189],"users.":[190],"In":[191],"article,":[193],"describe":[195],"tools":[198],"will":[200],"useful":[202],"infrastructure":[207],"open":[210],"research":[211],"challenges":[212],"see":[215],"such":[218],"infrastructures.":[219],"hoped":[222],"manuscript":[225],"can":[226],"serve":[227],"spur":[229],"greater":[230],"infrastructures":[234],"showing":[236],"involved,":[239],"thus,":[241],"allow":[242],"them":[243],"scale":[245],"larger":[248],"user":[249],"bases.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
