{"id":"https://openalex.org/W2742647527","doi":"https://doi.org/10.1093/bib/bbx098","title":"Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes","display_name":"Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes","publication_year":2017,"publication_date":"2017-07-18","ids":{"openalex":"https://openalex.org/W2742647527","doi":"https://doi.org/10.1093/bib/bbx098","mag":"2742647527","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968737"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx098","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbx098/19465707/bbx098.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbx098/19465707/bbx098.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066572638","display_name":"Nathan D. Olson","orcid":"https://orcid.org/0000-0003-2585-3037"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Nathan D Olson","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054369332","display_name":"Todd J. Treangen","orcid":"https://orcid.org/0000-0002-3760-564X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Todd J Treangen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102742241","display_name":"C. Hill","orcid":"https://orcid.org/0000-0002-6932-6303"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christopher M Hill","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052003788","display_name":"Victoria P. Cepeda-Espinoza","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Victoria Cepeda-Espinoza","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053208854","display_name":"Jay Ghurye","orcid":"https://orcid.org/0000-0003-1381-4081"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jay Ghurye","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042603880","display_name":"Sergey Koren","orcid":"https://orcid.org/0000-0002-1472-8962"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sergey Koren","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5064979917","display_name":"Mihai Pop","orcid":"https://orcid.org/0000-0001-9617-5304"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mihai Pop","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066572638"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.8386,"has_fulltext":false,"cited_by_count":164,"citation_normalized_percentile":{"value":0.97078952,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"20","issue":"4","first_page":"1140","last_page":"1150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9675580263137817},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6149255037307739},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5377040505409241},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5299680829048157},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4855465590953827},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4794682264328003},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.42810243368148804},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3907219171524048},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19412913918495178},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18346643447875977}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9675580263137817},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6149255037307739},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5377040505409241},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5299680829048157},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4855465590953827},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4794682264328003},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.42810243368148804},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3907219171524048},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19412913918495178},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18346643447875977},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbx098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx098","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbx098/19465707/bbx098.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968737","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968737","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6781575","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6781575","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx098","pdf_url":"https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbx098/19465707/bbx098.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G1299205327","display_name":null,"funder_award_id":"IIS-0812111","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2833577992","display_name":null,"funder_award_id":"IIS-1117247","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5177424890","display_name":null,"funder_award_id":"R01-HG-004885","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6693682640","display_name":null,"funder_award_id":"R01-AI-100947","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2742647527.pdf","grobid_xml":"https://content.openalex.org/works/W2742647527.grobid-xml"},"referenced_works_count":101,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W1579534339","https://openalex.org/W1791377616","https://openalex.org/W1794915052","https://openalex.org/W1958058086","https://openalex.org/W1966711026","https://openalex.org/W1972924519","https://openalex.org/W1979392661","https://openalex.org/W1982579644","https://openalex.org/W1982855075","https://openalex.org/W1983403167","https://openalex.org/W2001079689","https://openalex.org/W2004416209","https://openalex.org/W2016848076","https://openalex.org/W2020053713","https://openalex.org/W2022986961","https://openalex.org/W2023566940","https://openalex.org/W2027496182","https://openalex.org/W2030358199","https://openalex.org/W2033083661","https://openalex.org/W2050515555","https://openalex.org/W2052152008","https://openalex.org/W2056277172","https://openalex.org/W2072854577","https://openalex.org/W2078331392","https://openalex.org/W2087976699","https://openalex.org/W2090037139","https://openalex.org/W2094335760","https://openalex.org/W2098531465","https://openalex.org/W2099571549","https://openalex.org/W2104775949","https://openalex.org/W2105067980","https://openalex.org/W2107772251","https://openalex.org/W2108528950","https://openalex.org/W2109848222","https://openalex.org/W2111829451","https://openalex.org/W2112364185","https://openalex.org/W2112749286","https://openalex.org/W2113679889","https://openalex.org/W2114765236","https://openalex.org/W2114795390","https://openalex.org/W2117131162","https://openalex.org/W2118970626","https://openalex.org/W2120902911","https://openalex.org/W2121364424","https://openalex.org/W2126419817","https://openalex.org/W2132341951","https://openalex.org/W2136651963","https://openalex.org/W2140059069","https://openalex.org/W2141920662","https://openalex.org/W2145537580","https://openalex.org/W2149471901","https://openalex.org/W2150859566","https://openalex.org/W2151372451","https://openalex.org/W2151464048","https://openalex.org/W2151674273","https://openalex.org/W2153325555","https://openalex.org/W2157888653","https://openalex.org/W2159428741","https://openalex.org/W2160265768","https://openalex.org/W2162055898","https://openalex.org/W2171531867","https://openalex.org/W2175526948","https://openalex.org/W2179507357","https://openalex.org/W2189047836","https://openalex.org/W2194172909","https://openalex.org/W2264578395","https://openalex.org/W2266485219","https://openalex.org/W2270324082","https://openalex.org/W2271006909","https://openalex.org/W2294353708","https://openalex.org/W2323608404","https://openalex.org/W2340761128","https://openalex.org/W2383775397","https://openalex.org/W2396077153","https://openalex.org/W2397469828","https://openalex.org/W2428569935","https://openalex.org/W2469764418","https://openalex.org/W2503273054","https://openalex.org/W2527708324","https://openalex.org/W2535388830","https://openalex.org/W2537565528","https://openalex.org/W2538143681","https://openalex.org/W2569581880","https://openalex.org/W2578149194","https://openalex.org/W2580040938","https://openalex.org/W2581142702","https://openalex.org/W2587584940","https://openalex.org/W2594081754","https://openalex.org/W2598883567","https://openalex.org/W2599417231","https://openalex.org/W2606166848","https://openalex.org/W2607669908","https://openalex.org/W2905576637","https://openalex.org/W2912090453","https://openalex.org/W2950354111","https://openalex.org/W2952224179","https://openalex.org/W3099661149","https://openalex.org/W3102786052","https://openalex.org/W6638145308","https://openalex.org/W6736678799"],"related_works":["https://openalex.org/W3134563641","https://openalex.org/W2055448750","https://openalex.org/W3157741229","https://openalex.org/W1834562783","https://openalex.org/W1986608492","https://openalex.org/W3098103638","https://openalex.org/W2794386548","https://openalex.org/W1969665739","https://openalex.org/W4381279187","https://openalex.org/W1992950355"],"abstract_inverted_index":{"Metagenomic":[0,54],"samples":[1],"are":[2,34,101],"snapshots":[3],"of":[4,12,107,132,136,170,176,198,209,219,227],"complex":[5],"ecosystems":[6],"at":[7,61],"work.":[8],"They":[9],"comprise":[10],"hundreds":[11],"known":[13],"and":[14,21,25,51,64,84,120,140,181,185,222,230],"unknown":[15],"species,":[16],"contain":[17,145],"multiple":[18],"strain":[19],"variants":[20],"vary":[22],"greatly":[23],"within":[24],"across":[26],"environments.":[27],"Many":[28],"microbes":[29],"found":[30],"in":[31,38,75,97,110,124,149,158,167,212,224],"microbial":[32],"communities":[33],"not":[35],"easily":[36],"grown":[37],"culture":[39],"making":[40],"their":[41,48],"DNA":[42,77],"sequence":[43],"our":[44],"only":[45,111],"clue":[46],"into":[47],"evolutionary":[49],"history":[50],"biological":[52],"function.":[53],"assembly":[55,117,138,150,183,199,229],"is":[56],"a":[57,112,155,217],"computational":[58],"process":[59],"aimed":[60],"reconstructing":[62,76],"genes":[63],"genomes":[65],"from":[66,193],"metagenomic":[67,116,171,182,228],"mixtures.":[68],"Current":[69],"methods":[70],"have":[71,91,122,153],"made":[72],"significant":[73],"strides":[74],"segments":[78],"comprising":[79],"operons,":[80],"tandem":[81],"gene":[82],"arrays":[83],"syntenic":[85],"blocks.":[86],"Shorter,":[87],"higher-throughput":[88],"sequencing":[89,141],"technologies":[90,211],"become":[92],"the":[93,98,129,137,168,187,196,205,225],"de":[94],"facto":[95],"standard":[96],"field.":[99],"Sequencers":[100],"now":[102],"able":[103],"to":[104,128],"generate":[105],"billions":[106],"short":[108],"reads":[109],"few":[113],"days.":[114],"Multiple":[115],"strategies,":[118],"pipelines":[119],"assemblers":[121],"appeared":[123],"recent":[125,165],"years.":[126],"Owing":[127],"inherent":[130],"complexity":[131],"metagenome":[133,143],"assembly,":[134,172],"regardless":[135],"algorithm":[139],"method,":[142],"assemblies":[144,194],"errors.":[146],"Recent":[147],"developments":[148],"validation":[151,184,200],"tools":[152],"played":[154],"pivotal":[156],"role":[157],"improving":[159],"metagenomics":[160],"assemblers.":[161],"Here,":[162],"we":[163],"survey":[164],"progress":[166],"field":[169,226],"provide":[173],"an":[174],"overview":[175],"key":[177],"approaches":[178],"for":[179,207],"genomic":[180],"demonstrate":[186],"insights":[188],"that":[189],"can":[190],"be":[191],"derived":[192],"through":[195],"use":[197],"strategies.":[201],"We":[202,214],"also":[203],"discuss":[204],"potential":[206],"impact":[208],"long-read":[210],"metagenomics.":[213],"conclude":[215],"with":[216],"discussion":[218],"future":[220],"challenges":[221],"opportunities":[223],"validation.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":24},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}