{"id":"https://openalex.org/W2739035231","doi":"https://doi.org/10.1093/bib/bbx089","title":"AtCircDB: a tissue-specific database for<i>Arabidopsis</i>circular RNAs","display_name":"AtCircDB: a tissue-specific database for<i>Arabidopsis</i>circular RNAs","publication_year":2017,"publication_date":"2017-07-05","ids":{"openalex":"https://openalex.org/W2739035231","doi":"https://doi.org/10.1093/bib/bbx089","mag":"2739035231","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968841"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx089","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx089","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040685122","display_name":"Jiazheng Ye","orcid":"https://orcid.org/0009-0004-7604-3362"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiazhen Ye","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100403107","display_name":"Lin Wang","orcid":"https://orcid.org/0000-0001-7787-904X"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Wang","raw_affiliation_strings":["Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040743740","display_name":"LI Shu-zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuzhang Li","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026687940","display_name":"Qinran Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinran Zhang","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080501181","display_name":"Qinglei Zhang","orcid":"https://orcid.org/0000-0001-8438-0968"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinglei Zhang","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062281323","display_name":"Wenhao Tang","orcid":"https://orcid.org/0000-0002-4063-0846"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Tang","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100437036","display_name":"Kai Wang","orcid":"https://orcid.org/0000-0002-6170-4744"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Wang","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053408208","display_name":"Kun Song","orcid":"https://orcid.org/0000-0001-6216-8157"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Song","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047384190","display_name":"Gaurav Sablok","orcid":null},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Gaurav Sablok","raw_affiliation_strings":["Climate Change Cluster (C3), University of Technology Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Climate Change Cluster (C3), University of Technology Sydney, NSW, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013535721","display_name":"Xiaoyong Sun","orcid":"https://orcid.org/0000-0002-2425-3526"},"institutions":[{"id":"https://openalex.org/I74485261","display_name":"Shandong Agricultural University","ror":"https://ror.org/02ke8fw32","country_code":"CN","type":"education","lineage":["https://openalex.org/I74485261"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoyong Sun","raw_affiliation_strings":["Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Agricultural Big-Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian, Shandong, China","institution_ids":["https://openalex.org/I74485261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079017852","display_name":"Hongwei Zhao","orcid":"https://orcid.org/0000-0001-9107-765X"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongwei Zhao","raw_affiliation_strings":["Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5013535721","https://openalex.org/A5079017852"],"corresponding_institution_ids":["https://openalex.org/I119454577","https://openalex.org/I74485261"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.7045,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.91026442,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"20","issue":"1","first_page":"58","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.8069232106208801},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5225262641906738},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.4268991947174072},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3979834318161011},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3783913552761078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36177313327789307},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.35047152638435364},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23811587691307068},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21657782793045044}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.8069232106208801},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5225262641906738},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.4268991947174072},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3979834318161011},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3783913552761078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36177313327789307},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.35047152638435364},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23811587691307068},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21657782793045044},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014018","descriptor_name":"Tissue Distribution","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014018","descriptor_name":"Tissue Distribution","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014018","descriptor_name":"Tissue Distribution","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbx089","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx089","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968841","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968841","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3698443040","display_name":null,"funder_award_id":"31571306 to X.S","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1966411071","https://openalex.org/W2017919052","https://openalex.org/W2018432324","https://openalex.org/W2019230794","https://openalex.org/W2024248021","https://openalex.org/W2029989907","https://openalex.org/W2031593782","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2086055453","https://openalex.org/W2095799789","https://openalex.org/W2115171906","https://openalex.org/W2115662330","https://openalex.org/W2126938291","https://openalex.org/W2128549339","https://openalex.org/W2131478115","https://openalex.org/W2132940486","https://openalex.org/W2142739728","https://openalex.org/W2144177541","https://openalex.org/W2147625377","https://openalex.org/W2153655918","https://openalex.org/W2158217645","https://openalex.org/W2161003771","https://openalex.org/W2167868554","https://openalex.org/W2174483798","https://openalex.org/W2177654732","https://openalex.org/W2331419903","https://openalex.org/W2464424326","https://openalex.org/W2473991067","https://openalex.org/W2507445921","https://openalex.org/W2527673086","https://openalex.org/W2530008209","https://openalex.org/W2596986410","https://openalex.org/W2599444722","https://openalex.org/W4240367950","https://openalex.org/W6724876019"],"related_works":["https://openalex.org/W3147805512","https://openalex.org/W1976583488","https://openalex.org/W3149522072","https://openalex.org/W2776744275","https://openalex.org/W4388695760","https://openalex.org/W2804364832","https://openalex.org/W2024248021","https://openalex.org/W3174330474","https://openalex.org/W2971531865","https://openalex.org/W4388307780"],"abstract_inverted_index":{"Circular":[0],"RNAs":[1,69,91,119,168],"are":[2,131],"widely":[3],"existing":[4],"in":[5,25],"eukaryotes.":[6],"However,":[7],"there":[8],"is":[9,175],"as":[10,120],"yet":[11],"no":[12],"tissue-specific":[13,67,144],"Arabidopsis":[14,31,156],"circular":[15,23,53,63,68,90,118,122,157,167],"RNA":[16,24,32,73,123],"database,":[17],"which":[18],"hinders":[19],"the":[20,85,89,105,108,114,149],"study":[21],"of":[22,88,107,166],"plants.":[26],"Here,":[27],"we":[28,59,77,99,140],"used":[29,78],"622":[30],"sequencing":[33],"data":[34],"sets":[35],"from":[36],"87":[37],"independent":[38],"studies":[39],"hosted":[40],"at":[41,178],"NCBI":[42],"SRA":[43],"and":[44,51,70,137,154,169],"developed":[45,141],"AtCircDB":[46,174],"to":[47,83,134,147],"systematically":[48],"identify,":[49],"store":[50],"retrieve":[52],"RNAs.":[54,158],"By":[55,96],"analyzing":[56],"back-splicing":[57],"sites,":[58],"characterized":[60],"84":[61],"685":[62],"RNAs,":[64],"30":[65],"648":[66],"3486":[71],"microRNA-circular":[72],"interactions.":[74],"In":[75],"addition,":[76],"a":[79,93,142],"metric":[80,103],"(detection":[81],"score)":[82],"measure":[84],"detection":[86,109],"ability":[87],"using":[92],"big-data":[94],"approach.":[95],"experimental":[97],"validation,":[98],"demonstrate":[100],"that":[101,128],"this":[102],"improves":[104],"accuracy":[106],"algorithm.":[110],"We":[111],"also":[112],"defined":[113],"regions":[115,130],"hosting":[116],"enriched":[117],"super":[121],"regions.":[124],"The":[125],"results":[126],"suggest":[127],"these":[129],"highly":[132],"related":[133,171],"alternative":[135],"splicing":[136],"chloroplast.":[138],"Finally,":[139],"comprehensive":[143],"database":[145,160],"(AtCircDB)":[146],"help":[148],"community":[150],"store,":[151],"retrieve,":[152],"visualize":[153],"download":[155],"This":[159],"will":[161],"greatly":[162],"expand":[163],"our":[164],"understanding":[165],"their":[170],"regulatory":[172],"networks.":[173],"freely":[176],"available":[177],"http://genome.sdau.edu.cn/circRNA.":[179]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2017-07-31T00:00:00"}
