{"id":"https://openalex.org/W2730509063","doi":"https://doi.org/10.1093/bib/bbx070","title":"CircView: a visualization and exploration tool for circular RNAs","display_name":"CircView: a visualization and exploration tool for circular RNAs","publication_year":2017,"publication_date":"2017-05-30","ids":{"openalex":"https://openalex.org/W2730509063","doi":"https://doi.org/10.1093/bib/bbx070","mag":"2730509063","pmid":"https://pubmed.ncbi.nlm.nih.gov/29106456"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx070","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx070","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102940907","display_name":"Jing Feng","orcid":"https://orcid.org/0000-0002-7425-2994"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Feng","raw_affiliation_strings":["International School of Software, Wuhan University"],"affiliations":[{"raw_affiliation_string":"International School of Software, Wuhan University","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053389067","display_name":"Yu Xiang","orcid":"https://orcid.org/0000-0001-8333-0782"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Xiang","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046582691","display_name":"Siyu Xia","orcid":"https://orcid.org/0000-0002-4241-4944"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyu Xia","raw_affiliation_strings":["School of Basic Medical Sciences, Wuhan University"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Wuhan University","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100770239","display_name":"Huan Liu","orcid":"https://orcid.org/0000-0002-9947-6687"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106882","display_name":"Wuhan Institute of Virology","ror":"https://ror.org/01jxjav08","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106882"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Liu","raw_affiliation_strings":["Wuhan Institute of Virology, Chinese Academy of Sciences"],"affiliations":[{"raw_affiliation_string":"Wuhan Institute of Virology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210106882","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384930","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0003-4480-5663"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["School of Basic Medical Sciences, Wuhan University"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Wuhan University","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025654004","display_name":"Fatma Muge Ozguc","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fatma Muge Ozguc","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lijun Lei","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Lei","raw_affiliation_strings":["School of Basic Medical Sciences, Wuhan University"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Wuhan University","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067821474","display_name":"Ruoshan Kong","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruoshan Kong","raw_affiliation_strings":["International School of Software, Wuhan University"],"affiliations":[{"raw_affiliation_string":"International School of Software, Wuhan University","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089771018","display_name":"Lixia Diao","orcid":"https://orcid.org/0000-0001-6995-4492"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lixia Diao","raw_affiliation_strings":["Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034357519","display_name":"Chunjiang He","orcid":"https://orcid.org/0000-0002-4868-331X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chunjiang He","raw_affiliation_strings":["School of Basic Medical Sciences and Hubei Province Key Laboratory of Allergy and Immunology, Wuhan University"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences and Hubei Province Key Laboratory of Allergy and Immunology, Wuhan University","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048715916","display_name":"Leng Han","orcid":"https://orcid.org/0000-0002-7380-2640"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Leng Han","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5034357519","https://openalex.org/A5048715916"],"corresponding_institution_ids":["https://openalex.org/I37461747","https://openalex.org/I919571938"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.6946,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.9084989,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"20","issue":"3","first_page":"745","last_page":"751"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9602000117301941,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7071573138237},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5761258602142334},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5672142505645752},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.4635644853115082},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.4297635555267334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41194507479667664},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22155869007110596},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16144299507141113},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12715142965316772}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7071573138237},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5761258602142334},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5672142505645752},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.4635644853115082},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.4297635555267334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41194507479667664},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22155869007110596},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16144299507141113},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12715142965316772}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbx070","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx070","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29106456","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29106456","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1911797124","display_name":null,"funder_award_id":"201606275095","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G6254849421","display_name":null,"funder_award_id":"RR150085","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"}],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1566841623","https://openalex.org/W1932714322","https://openalex.org/W1966411071","https://openalex.org/W1966557314","https://openalex.org/W1967791012","https://openalex.org/W1981726010","https://openalex.org/W2021341670","https://openalex.org/W2022495797","https://openalex.org/W2023139734","https://openalex.org/W2034305079","https://openalex.org/W2051477788","https://openalex.org/W2054891772","https://openalex.org/W2055493067","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2086055453","https://openalex.org/W2110884132","https://openalex.org/W2115662330","https://openalex.org/W2117977572","https://openalex.org/W2118334191","https://openalex.org/W2126144698","https://openalex.org/W2126938291","https://openalex.org/W2132940486","https://openalex.org/W2147625377","https://openalex.org/W2147806662","https://openalex.org/W2174483798","https://openalex.org/W2194134194","https://openalex.org/W2196247406","https://openalex.org/W2210577735","https://openalex.org/W2261488440","https://openalex.org/W2284415752","https://openalex.org/W2286014095","https://openalex.org/W2464424326","https://openalex.org/W2493763501","https://openalex.org/W2507445921","https://openalex.org/W2510334816","https://openalex.org/W2530008209","https://openalex.org/W2599812844","https://openalex.org/W6735315216"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W3174330474","https://openalex.org/W2971531865","https://openalex.org/W4388307780"],"abstract_inverted_index":{"Circular":[0],"RNAs":[1],"(circRNAs)":[2],"are":[3,11],"novel":[4],"rising":[5],"stars":[6],"of":[7,20,84,138],"noncoding":[8],"RNAs,":[9],"which":[10,130],"highly":[12],"abundant":[13],"and":[14,39,46,57,80,115,127,140],"evolutionarily":[15],"conserved":[16],"across":[17],"species.":[18],"Number":[19],"publications":[21],"related":[22],"to":[23,44,55,77,81,92,105,125,133],"circRNAs":[24,69,79,94,139],"increased":[25],"sharply":[26],"in":[27,33],"recent":[28],"years,":[29],"representing":[30],"emerging":[31],"focuses":[32],"the":[34,107,142],"field.":[35],"Therefore,":[36,60],"tools,":[37],"pipelines":[38],"databases":[40],"have":[41],"been":[42],"developed":[43],"identify":[45],"store":[47],"circRNAs.":[48,59,88],"However,":[49],"there":[50],"is":[51,121],"no":[52],"existing":[53,72],"tool":[54,67,124],"visualize":[56,78,126],"explore":[58,93,128],"we":[61],"introduce":[62],"CircView,":[63],"a":[64,122],"user-friendly":[65],"visualization":[66],"for":[68],"detected":[70,87,95],"from":[71],"tools.":[73,100],"CircView":[74,89,102,120],"enables":[75],"users":[76,91,104,132],"quantify":[82],"number":[83],"samples":[85],"with":[86],"allows":[90,103],"by":[96],"unique":[97,123],"or":[98],"multiple":[99],"Furthermore,":[101],"view":[106],"regulatory":[108],"elements,":[109],"such":[110],"as":[111],"microRNA":[112],"response":[113],"elements":[114],"RNA-binding":[116],"protein":[117],"binding":[118],"sites.":[119],"circRNAs,":[129],"helps":[131],"better":[134],"understand":[135],"potential":[136],"functions":[137],"design":[141],"functional":[143],"experiments.":[144]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
