{"id":"https://openalex.org/W2614097244","doi":"https://doi.org/10.1093/bib/bbx050","title":"Subcellular locations of potential cell wall proteins in plants: predictors, databases and cross-referencing","display_name":"Subcellular locations of potential cell wall proteins in plants: predictors, databases and cross-referencing","publication_year":2017,"publication_date":"2017-04-12","ids":{"openalex":"https://openalex.org/W2614097244","doi":"https://doi.org/10.1093/bib/bbx050","mag":"2614097244","pmid":"https://pubmed.ncbi.nlm.nih.gov/30481282"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx050","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx050","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068552713","display_name":"Xiaolin Wu","orcid":"https://orcid.org/0000-0002-6200-7000"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolin Wu","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University (HAU), China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University (HAU), China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036298033","display_name":"Qinbin Zhang","orcid":"https://orcid.org/0000-0002-9772-1511"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qinbin Zhang","raw_affiliation_strings":["College of Life Sciences, HAU"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, HAU","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038759765","display_name":"Zhaokun Wu","orcid":"https://orcid.org/0000-0003-1733-6769"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhaokun Wu","raw_affiliation_strings":["College of Life Sciences, HAU"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, HAU","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090497267","display_name":"Fuju Tai","orcid":"https://orcid.org/0000-0001-7826-2607"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fuju Tai","raw_affiliation_strings":["College of Life Sciences, HAU"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, HAU","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031091204","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0002-3711-5181"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wei Wang","raw_affiliation_strings":["HAU"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HAU","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5031091204"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.4372,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.62032024,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"19","issue":"6","first_page":"1130","last_page":"1140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8684829473495483},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6141239404678345},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4984722137451172},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4889174997806549},{"id":"https://openalex.org/keywords/cell-wall","display_name":"Cell wall","score":0.47213584184646606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4612852931022644},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39261722564697266},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3315609395503998},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32374244928359985},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16725066304206848},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12689471244812012}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8684829473495483},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6141239404678345},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4984722137451172},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4889174997806549},{"id":"https://openalex.org/C125235067","wikidata":"https://www.wikidata.org/wiki/Q128700","display_name":"Cell wall","level":2,"score":0.47213584184646606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4612852931022644},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39261722564697266},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3315609395503998},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32374244928359985},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16725066304206848},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12689471244812012}],"mesh":[{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbx050","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbx050","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30481282","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30481282","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W94267568","https://openalex.org/W634646383","https://openalex.org/W1579360135","https://openalex.org/W1607784912","https://openalex.org/W1935810336","https://openalex.org/W1979803040","https://openalex.org/W1981823294","https://openalex.org/W1982289655","https://openalex.org/W1992582172","https://openalex.org/W1993340457","https://openalex.org/W2000492651","https://openalex.org/W2004622806","https://openalex.org/W2012686113","https://openalex.org/W2024661768","https://openalex.org/W2036154117","https://openalex.org/W2039625309","https://openalex.org/W2042789470","https://openalex.org/W2052841916","https://openalex.org/W2074292619","https://openalex.org/W2074552757","https://openalex.org/W2077174738","https://openalex.org/W2080280228","https://openalex.org/W2080915318","https://openalex.org/W2089047063","https://openalex.org/W2090637326","https://openalex.org/W2094201044","https://openalex.org/W2096358531","https://openalex.org/W2096814073","https://openalex.org/W2100133889","https://openalex.org/W2101521215","https://openalex.org/W2101545093","https://openalex.org/W2103132055","https://openalex.org/W2105717814","https://openalex.org/W2108206279","https://openalex.org/W2111127373","https://openalex.org/W2112058726","https://openalex.org/W2115483881","https://openalex.org/W2117056672","https://openalex.org/W2117414049","https://openalex.org/W2121095331","https://openalex.org/W2127322768","https://openalex.org/W2129410760","https://openalex.org/W2132104869","https://openalex.org/W2135230723","https://openalex.org/W2141816565","https://openalex.org/W2144641302","https://openalex.org/W2147838931","https://openalex.org/W2148676465","https://openalex.org/W2149704342","https://openalex.org/W2152458080","https://openalex.org/W2152770371","https://openalex.org/W2154139219","https://openalex.org/W2155300232","https://openalex.org/W2157599860","https://openalex.org/W2158173168","https://openalex.org/W2168441626","https://openalex.org/W2169805130","https://openalex.org/W2279824931","https://openalex.org/W2476326880","https://openalex.org/W2525794863","https://openalex.org/W2557496587","https://openalex.org/W2559191318","https://openalex.org/W2563766064","https://openalex.org/W2565158420","https://openalex.org/W2584711342","https://openalex.org/W2917375902","https://openalex.org/W3101375823","https://openalex.org/W4210702584"],"related_works":["https://openalex.org/W2288906059","https://openalex.org/W1982829397","https://openalex.org/W1990946178","https://openalex.org/W2537644759","https://openalex.org/W2347437365","https://openalex.org/W2106414650","https://openalex.org/W1999412725","https://openalex.org/W4376862128","https://openalex.org/W4390205769","https://openalex.org/W2124137418"],"abstract_inverted_index":{"The":[0,44],"cell":[1,21,33,42,45,126],"wall":[2,34,46,127],"is":[3,62,95,228],"the":[4,41,66,90,118,125,133,143,165,170,175,186,195,205,222],"most":[5],"striking":[6],"feature":[7],"that":[8,76,189,230],"distinguishes":[9],"plant":[10],"cells":[11],"from":[12,80,164],"animal":[13],"cells.":[14],"It":[15,227],"plays":[16],"an":[17,148],"essential":[18],"role":[19],"in":[20,30,221],"shape,":[22],"stability,":[23],"growth":[24],"and":[25,56,83,108,128,139,153,160,179,209,219,241],"protection.":[26],"Despite":[27],"being":[28],"present":[29],"small":[31],"amounts,":[32],"proteins":[35,55,102],"(CWPs)":[36],"are":[37,110],"crucial":[38],"components":[39],"of":[40,50,69,73,93,100,124,135,145,151,198,204,212,225],"wall.":[43],"proteome":[47],"generally":[48],"consists":[49],"sensu":[51],"stricto":[52],"CWPs,":[53,129],"apoplast":[54],"extracellular":[57],"secreted":[58],"proteins.":[59,155],"Currently,":[60],"there":[61,109],"a":[63,70,202,210],"need":[64],"for":[65,142,181,239,244,251],"bioinformatics":[67,223,245],"analysis":[68,224],"tremendous":[71],"number":[72],"protein":[74],"sequences":[75],"have":[77,103],"been":[78,105],"generated":[79],"genomic,":[81],"transcriptomic":[82],"proteomics":[84],"research.":[85],"Compared":[86],"with":[87],"intracellular":[88],"proteins,":[89],"location":[91,197,207],"prediction":[92,144,208],"CWPs":[94,146,159,238],"challenging":[96],"because":[97],"many":[98],"aspects":[99],"these":[101],"not":[104],"experimentally":[106,157],"characterized,":[107],"no":[111],"CWP-trained,":[112],"specific":[113],"predictors":[114,138,141,176],"available.":[115],"By":[116],"introducing":[117],"biological":[119],"relevance":[120],"(particularly":[121],"molecular":[122],"aspects)":[123],"we":[130,172,184,216],"critically":[131],"evaluated":[132],"accuracy":[134],"16":[136],"state-of-the-art":[137],"classical":[140],"using":[147],"independent":[149],"database":[150],"Arabidopsis":[152],"rice":[154],"All":[156],"verified":[158],"non-CWPs":[161],"were":[162],"retrieved":[163],"UniProt":[166],"Knowledgebase.":[167],"Based":[168],"on":[169],"evaluation,":[171],"currently":[173],"recommend":[174],"mGOASVM,":[177],"HybridGO-Loc":[178],"FUEL-mLoc":[180],"CWPs.":[182,199,214,226,252],"Furthermore,":[183],"outlined":[185],"public":[187],"databases":[188],"can":[190],"be":[191],"used":[192],"to":[193,247],"cross-reference":[194,211],"subcellular":[196,206],"We":[200],"illustrate":[201],"flowchart":[203],"possible":[213],"Finally,":[215],"discuss":[217],"challenges":[218],"perspectives":[220],"hoped":[229],"this":[231],"article":[232],"will":[233],"provide":[234,242],"practical":[235],"guidance":[236],"regarding":[237],"nonspecialists":[240],"insight":[243],"experts":[246],"develop":[248],"computational":[249],"tools":[250]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
