{"id":"https://openalex.org/W2608761935","doi":"https://doi.org/10.1093/bib/bbx041","title":"Pioneering topological methods for network-based drug\u2013target prediction by exploiting a brain-network self-organization theory","display_name":"Pioneering topological methods for network-based drug\u2013target prediction by exploiting a brain-network self-organization theory","publication_year":2017,"publication_date":"2017-03-31","ids":{"openalex":"https://openalex.org/W2608761935","doi":"https://doi.org/10.1093/bib/bbx041","mag":"2608761935","pmid":"https://pubmed.ncbi.nlm.nih.gov/28453640"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx041","pdf_url":"https://academic.oup.com/bib/article-pdf/19/6/1183/27119103/bbx041.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/19/6/1183/27119103/bbx041.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033694295","display_name":"Claudio Dur\u00e1n","orcid":"https://orcid.org/0000-0001-9447-7130"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Claudio Dur\u00e1n","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012269077","display_name":"Simone Daminelli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simone Daminelli","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060984728","display_name":"Josephine Maria Thomas","orcid":"https://orcid.org/0000-0002-1787-1748"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Josephine M Thomas","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034265176","display_name":"V. Joachim Haupt","orcid":"https://orcid.org/0000-0003-0547-1285"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"V Joachim Haupt","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Schroeder","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5007730744","display_name":"Carlo Vittorio Cannistraci","orcid":"https://orcid.org/0000-0003-0100-8410"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carlo Vittorio Cannistraci","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033694295"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.1659,"has_fulltext":false,"cited_by_count":76,"citation_normalized_percentile":{"value":0.9642404,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"19","issue":"6","first_page":"1183","last_page":"1202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6382603049278259},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4696703851222992},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.4596717953681946},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3433369994163513},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12280505895614624},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11354809999465942}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6382603049278259},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4696703851222992},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.4596717953681946},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3433369994163513},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12280505895614624},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11354809999465942},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbx041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx041","pdf_url":"https://academic.oup.com/bib/article-pdf/19/6/1183/27119103/bbx041.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28453640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28453640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5269023","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6291778","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx041","pdf_url":"https://academic.oup.com/bib/article-pdf/19/6/1183/27119103/bbx041.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2608761935.pdf","grobid_xml":"https://content.openalex.org/works/W2608761935.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W19838944","https://openalex.org/W379337736","https://openalex.org/W934261879","https://openalex.org/W1466286227","https://openalex.org/W1504647324","https://openalex.org/W1544009106","https://openalex.org/W1556758605","https://openalex.org/W1869829652","https://openalex.org/W1893639437","https://openalex.org/W1967032556","https://openalex.org/W1968651933","https://openalex.org/W1971106435","https://openalex.org/W1972978214","https://openalex.org/W1975426150","https://openalex.org/W1978880915","https://openalex.org/W1979537657","https://openalex.org/W1984084871","https://openalex.org/W2007444087","https://openalex.org/W2008620264","https://openalex.org/W2018518196","https://openalex.org/W2021505154","https://openalex.org/W2024908724","https://openalex.org/W2025577942","https://openalex.org/W2027684023","https://openalex.org/W2029056028","https://openalex.org/W2036992515","https://openalex.org/W2037933327","https://openalex.org/W2039636022","https://openalex.org/W2040886654","https://openalex.org/W2050157787","https://openalex.org/W2050583899","https://openalex.org/W2054141820","https://openalex.org/W2066201825","https://openalex.org/W2066692087","https://openalex.org/W2073129106","https://openalex.org/W2075286470","https://openalex.org/W2081017501","https://openalex.org/W2082545449","https://openalex.org/W2084938591","https://openalex.org/W2091019377","https://openalex.org/W2096541451","https://openalex.org/W2096864392","https://openalex.org/W2106029302","https://openalex.org/W2108069034","https://openalex.org/W2108155748","https://openalex.org/W2109991441","https://openalex.org/W2111094216","https://openalex.org/W2111811203","https://openalex.org/W2113951828","https://openalex.org/W2116504907","https://openalex.org/W2126671570","https://openalex.org/W2129370330","https://openalex.org/W2131848047","https://openalex.org/W2139736926","https://openalex.org/W2144000913","https://openalex.org/W2147330086","https://openalex.org/W2148757128","https://openalex.org/W2153838454","https://openalex.org/W2154454189","https://openalex.org/W2154718035","https://openalex.org/W2160774768","https://openalex.org/W2166550586","https://openalex.org/W2167821759","https://openalex.org/W2177317049","https://openalex.org/W2178378573","https://openalex.org/W2237930575","https://openalex.org/W2256553158","https://openalex.org/W2263739890","https://openalex.org/W2288135941","https://openalex.org/W2302413701","https://openalex.org/W2325394291","https://openalex.org/W2334728720","https://openalex.org/W2343107734","https://openalex.org/W2410743230","https://openalex.org/W2482290902","https://openalex.org/W2508570029","https://openalex.org/W2517648041","https://openalex.org/W2523856253","https://openalex.org/W2542327521","https://openalex.org/W2562589097","https://openalex.org/W2563367311","https://openalex.org/W2600723715","https://openalex.org/W2798617097","https://openalex.org/W2962746482","https://openalex.org/W3047398590","https://openalex.org/W3142588439","https://openalex.org/W3152157423","https://openalex.org/W4232932184","https://openalex.org/W4243361211","https://openalex.org/W4285719527","https://openalex.org/W6642299503","https://openalex.org/W6657710451","https://openalex.org/W6690078474","https://openalex.org/W6701283938","https://openalex.org/W6703994164","https://openalex.org/W6728813768","https://openalex.org/W6735804530","https://openalex.org/W6772461537"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"The":[0],"bipartite":[1,76,84],"network":[2,57],"representation":[3],"of":[4,14,34,43,92,137,145,173,184],"the":[5,15,48,83,93,121,138,171,197],"drug-target":[6,164],"interactions":[7],"(DTIs)":[8],"in":[9,56,75,100,192],"a":[10,134,159],"biosystem":[11],"enhances":[12],"understanding":[13],"drugs'":[16],"multifaceted":[17],"action":[18],"modes,":[19],"suggests":[20],"therapeutic":[21],"switching":[22],"for":[23,47,71,128],"approved":[24],"drugs":[25],"and":[26,38,62,104,187,209],"unveils":[27],"possible":[28],"side":[29],"effects.":[30],"As":[31],"experimental":[32],"testing":[33],"DTIs":[35],"is":[36],"costly":[37],"time-consuming,":[39],"computational":[40],"predictors":[41,54],"are":[42],"great":[44],"aid.":[45],"Here,":[46],"first":[49],"time,":[50],"state-of-the-art":[51],"DTI":[52,131],"supervised":[53,208],"custom-made":[55],"biology":[58],"were":[59],"compared-using":[60],"standard":[61],"innovative":[63],"validation":[64],"frameworks-with":[65],"unsupervised":[66,179],"pure":[67],"topological-based":[68],"models":[69],"designed":[70],"general-purpose":[72],"link":[73],"prediction":[74],"networks.":[77],"Surprisingly,":[78],"our":[79],"results":[80],"show":[81],"that":[82,124,142,177],"topology":[85],"alone,":[86],"if":[87],"adequately":[88],"exploited":[89],"by":[90,182],"means":[91],"recently":[94],"proposed":[95],"local-community-paradigm":[96],"(LCP)":[97],"theory-initially":[98],"detected":[99],"brain-network":[101],"topological":[102,185],"self-organization":[103,186],"afterwards":[105],"generalized":[106],"to":[107,112,162],"any":[108],"complex":[109],"network-is":[110],"able":[111],"suggest":[113],"highly":[114],"reliable":[115],"predictions,":[116],"with":[117,120],"comparable":[118],"performance":[119],"state-of-the-art-supervised":[122],"methods":[123,146],"exploit":[125],"additional":[126],"(non-topological,":[127],"instance":[129],"biochemical)":[130],"knowledge.":[132],"Furthermore,":[133],"detailed":[135],"analysis":[136],"novel":[139],"predictions":[140],"revealed":[141],"each":[143],"class":[144],"prioritizes":[147],"distinct":[148],"true":[149],"interactions;":[150],"hence,":[151],"combining":[152],"methodologies":[153],"based":[154,205],"on":[155,206],"diverse":[156],"principles":[157,183],"represents":[158],"promising":[160],"strategy":[161],"improve":[163],"discovery.":[165],"To":[166],"conclude,":[167],"this":[168],"study":[169],"promotes":[170],"power":[172],"bio-inspired":[174],"computing,":[175],"demonstrating":[176],"simple":[178],"rules":[180],"inspired":[181],"adaptiveness":[188],"arising":[189],"during":[190],"learning":[191],"living":[193],"intelligent":[194],"systems":[195],"(like":[196],"brain)":[198],"can":[199],"efficiently":[200],"equal":[201],"perform":[202],"complicated":[203],"algorithms":[204],"advanced,":[207],"knowledge-based":[210],"engineering.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6}],"updated_date":"2026-04-24T08:23:43.765630","created_date":"2025-10-10T00:00:00"}
